Sb09g027530 (Sorghum bicolor)
AP2,B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2)
PF02362 (B3)
IPR001471
IPR003340
Sb09g027530 T010512_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
RAV1
M06692_2.00
Arabidopsis thaliana
NCAACADAWWHHWHHHKDDNN

NNHHMDDDWDDWWTHTGTTGN
Dap-seq
OMalley et al.(2016)
RAV1_colamp_a
0.792 0.792
RAV1
M06693_2.00
Arabidopsis thaliana
VCAACADAWWHHAYNHB

VDNRTDDWWTHTGTTGB
Dap-seq
OMalley et al.(2016)
RAV1_col
0.792 0.792
RAV1
M02649_2.00
Arabidopsis thaliana
VNSCAACAKWDN

NHWMTGTTGSNB
SELEX
Mathelier et al.(2014)
MA0582.1
0.792 0.792
RAV1
M02650_2.00
Arabidopsis thaliana
NHCWCCTGRNNH

DNNYCAGGWGDN
SELEX
Mathelier et al.(2014)
MA0583.1
0.792 0.792
RAV1
M09748_2.00
Arabidopsis thaliana
VNSCAACAKWDN

NHWMTGTTGSNB
Transfac
Matys et al.(2006)
P$RAV1_01
0.792 0.792
RAV1
M09749_2.00
Arabidopsis thaliana
NHCWCCTGRNNH

DNNYCAGGWGDN
Transfac
Matys et al.(2006)
P$RAV1_02
0.792 0.792
ARF14
M01648_2.00
Arabidopsis thaliana
RCAACAKA

TMTGTTGY
PBM
Weirauch et al.(2014)
pTH8727
0.772 0.772
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Sb09g027530.1 AP2 81 130
Sb09g027530.1 B3 215 325

Links

Other AP2,B3 family TFs
Other Sorghum bicolor TFs

169 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
GRMZM2G059939 Zea mays GRMZM2G059939 I 0.980
Pavir.Ca01826 Panicum virgatum Pavir.Ca01826 I 0.945
Pavir.J13012 Panicum virgatum Pavir.J13012 I 0.933
Si024576m.g Setaria italica Si024576m.g I 0.926
OPUNC05G22370 Oryza punctata OPUNC05G22370 I 0.913
OGLUM05G26380 Oryza glumaepatula OGLUM05G26380 I 0.913
OMERI05G22110 Oryza meridionalis OMERI05G22110 I 0.913
OS05G0549800 Oryza sativa OS05G0549800 I 0.906
ONIVA05G26000 Oryza nivara ONIVA05G26000 I 0.899
BGIOSGA020315 Oryza indica BGIOSGA020315 I 0.899
GRMZM2G159592 Zea mays GRMZM2G159592 I 0.879
GRMZM2G169654 Zea mays GRMZM2G169654 I 0.872
ORUFI01G30390 Oryza rufipogon ORUFI01G30390 I 0.856
OMERI01G25110 Oryza meridionalis OMERI01G25110 I 0.856
OS01G0693400 Oryza sativa OS01G0693400 I 0.856
ORGLA01G0225300 Oryza glaberrima ORGLA01G0225300 I 0.856
OBART01G27360 Oryza barthii OBART01G27360 I 0.856
ONIVA01G31290 Oryza nivara ONIVA01G31290 I 0.856
OPUNC01G27280 Oryza punctata OPUNC01G27280 I 0.856
LPERR05G20600 Leersia perrieri LPERR05G20600 I 0.852
BRADI2G47220 Brachypodium distachyon BRADI2G47220 I 0.852
LPERR01G23470 Leersia perrieri LPERR01G23470 I 0.852
Pavir.Eb02845 Panicum virgatum Pavir.Eb02845 I 0.846
GSMUA_Achr5G09950_001 Musa acuminata GSMUA_Achr5G09950_001 I 0.839
OGLUM01G31260 Oryza glumaepatula OGLUM01G31260 I 0.832
Si004045m.g Setaria italica Si004045m.g I 0.832
Pavir.Ea02092 Panicum virgatum Pavir.Ea02092 I 0.826
Ca_08436 Cicer arietinum Ca_08436 I 0.826
MTR_5g053920 Medicago truncatula MTR_5g053920 I 0.826
BRADI2G17610 Brachypodium distachyon BRADI2G17610 I 0.826
MTR_1g093600 Medicago truncatula MTR_1g093600 I 0.820
Sb03g031860 Sorghum bicolor Sb03g031860 I 0.819
PRUPE_ppa006243mg Prunus persica PRUPE_ppa006243mg I 0.819
GLYMA10G34760 Glycine max GLYMA10G34760 I 0.819
MDP0000128924 Malus domestica MDP0000128924 I 0.819
Ciclev10031846m.g Citrus clementina Ciclev10031846m.g I 0.819
gene03871-v1.0-hybrid Fragaria vesca gene03871-v1.0-hybrid I 0.819
GLYMA02G11060 Glycine max GLYMA02G11060 I 0.819
Pm029015 Prunus mume Pm029015 I 0.819
orange1.1g017035m.g Citrus sinensis orange1.1g017035m.g I 0.819
Ca_24123 Cicer arietinum Ca_24123 I 0.819
PK15652.1 Cannabis sativa PK15652.1 I 0.813
POPTR_0008s11600 Populus trichocarpa POPTR_0008s11600 I 0.812
GLYMA20G32730 Glycine max GLYMA20G32730 I 0.812
cassava43329.valid.m1 Manihot esculenta cassava43329.valid.m1 I 0.812
VIT_01s0011g03070 Vitis vinifera VIT_01s0011g03070 I 0.812
GLYMA01G22260 Glycine max GLYMA01G22260 I 0.812
AMTR_s00007p00238950 Amborella trichopoda AMTR_s00007p00238950 I 0.812
MDP0000939633 Malus domestica MDP0000939633 I 0.807
SapurV1A.0079s0450 Salix purpurea SapurV1A.0079s0450 I 0.807
SapurV1A.1001s0020 Salix purpurea SapurV1A.1001s0020 I 0.805
Thhalv10010019m.g Eutrema salsugineum Thhalv10010019m.g I 0.805
Thhalv10007983m.g Eutrema salsugineum Thhalv10007983m.g I 0.805
SapurV1A.3302s0010 Salix purpurea SapurV1A.3302s0010 I 0.805
Gorai.008G185900 Gossypium raimondii Gorai.008G185900 I 0.805
TCM_011862 Theobroma cacao TCM_011862 I 0.805
RAV2 Arabidopsis thaliana AT1G68840 D 0.805
29738.m001050 Ricinus communis 29738.m001050 I 0.805
Aquca_026_00225 Aquilegia coerulea Aquca_026_00225 I 0.805
PGSC0003DMG400000811 Solanum tuberosum PGSC0003DMG400000811 I 0.805
Gorai.013G080000 Gossypium raimondii Gorai.013G080000 I 0.805
POPTR_0010s13930 Populus trichocarpa POPTR_0010s13930 I 0.805
GSMUA_Achr4G06710_001 Musa acuminata GSMUA_Achr4G06710_001 I 0.805
RAV2 Arabidopsis lyrata fgenesh2_kg.2__1141__AT1G68840.1 I 0.805
Cagra.3501s0173 Capsella grandiflora Cagra.3501s0173 I 0.799
Bra019821 Brassica rapa Bra019821 I 0.799
Thhalv10019566m.g Eutrema salsugineum Thhalv10019566m.g I 0.799
RAV1 Arabidopsis lyrata scaffold_101479.1 I 0.799
Carubv10009612m.g Capsella rubella Carubv10009612m.g I 0.799
Bostr.10273s0485 Boechera stricta Bostr.10273s0485 I 0.799
Bo5g015210 Brassica oleracea Bo5g015210 I 0.799
cassava12324.valid.m1 Manihot esculenta cassava12324.valid.m1 I 0.799
Solyc05g009790.1 Solanum lycopersicum Solyc05g009790.1 I 0.799
Pavir.J00384 Panicum virgatum Pavir.J00384 I 0.794
BRADI2G02720 Brachypodium distachyon BRADI2G02720 I 0.792
Lus10041487.g Linum usitatissimum Lus10041487.g I 0.792
Bra011002 Brassica rapa Bra011002 I 0.792
GSMUA_Achr2G22560_001 Musa acuminata GSMUA_Achr2G22560_001 I 0.792
Cla020675 Citrullus lanatus Cla020675 I 0.792
TEM1 Arabidopsis lyrata scaffold_102941.1 I 0.792
Cucsa.283870 Cucumis sativus Cucsa.283870 I 0.792
Bostr.13671s0120 Boechera stricta Bostr.13671s0120 I 0.792
Bostr.12659s0398 Boechera stricta Bostr.12659s0398 I 0.792
Cagra.1157s0007 Capsella grandiflora Cagra.1157s0007 I 0.792
Carubv10020536m.g Capsella rubella Carubv10020536m.g I 0.792
Eucgr.B03048 Eucalyptus grandis Eucgr.B03048 I 0.787
RAV1 Arabidopsis thaliana AT1G13260 D 0.787
GSMUA_Achr3G21100_001 Musa acuminata GSMUA_Achr3G21100_001 I 0.785
Traes_3B_90BE2090B Triticum aestivum Traes_3B_90BE2090B I 0.785
MLOC_7940 Hordeum vulgare MLOC_7940 I 0.785
Bo3g138550 Brassica oleracea Bo3g138550 I 0.785
Aquca_002_01106 Aquilegia coerulea Aquca_002_01106 I 0.785
Bra026917 Brassica rapa Bra026917 I 0.785
Bra038346 Brassica rapa Bra038346 I 0.779
mgf019592m Mimulus guttatus mgf019592m I 0.779
GSMUA_Achr1G21250_001 Musa acuminata GSMUA_Achr1G21250_001 I 0.779
ARF14 Arabidopsis thaliana AT3G25730 D 0.772
Bo2g061320 Brassica oleracea Bo2g061320 I 0.772
Bra024735 Brassica rapa Bra024735 I 0.772
EDF3 Arabidopsis lyrata fgenesh2_kg.5__327__AT3G25730.1 I 0.772
Si001909m.g Setaria italica Si001909m.g I 0.772
Pavir.Eb00702 Panicum virgatum Pavir.Eb00702 I 0.772
TRIUR3_24851 Triticum urartu TRIUR3_24851 I 0.772
LPERR01G02360 Leersia perrieri LPERR01G02360 I 0.772
OPUNC01G02240 Oryza punctata OPUNC01G02240 I 0.767
TRAES3BF108500010CFD_g Triticum aestivum TRAES3BF108500010CFD_g I 0.765
Bo5g043120 Brassica oleracea Bo5g043120 I 0.765
Traes_3B_DF7E924991 Triticum aestivum Traes_3B_DF7E924991 I 0.765
Lus10021707.g Linum usitatissimum Lus10021707.g I 0.765
Sb03g006590 Sorghum bicolor Sb03g006590 I 0.765
TRAES3BF098200010CFD_g Triticum aestivum TRAES3BF098200010CFD_g I 0.765
OB01G12600 Oryza brachyantha OB01G12600 I 0.765
Pavir.J23476 Panicum virgatum Pavir.J23476 I 0.765
MLOC_56567 Hordeum vulgare MLOC_56567 I 0.765
Traes_3B_DF7E92499 Triticum aestivum Traes_3B_DF7E92499 I 0.765
Gorai.005G138100 Gossypium raimondii Gorai.005G138100 I 0.765
VIT_14s0083g00130 Vitis vinifera VIT_14s0083g00130 I 0.760
Bostr.0556s0243 Boechera stricta Bostr.0556s0243 I 0.758
Carubv10019207m.g Capsella rubella Carubv10019207m.g I 0.758
Pavir.Ea00549 Panicum virgatum Pavir.Ea00549 I 0.758
GSMUA_Achr6G01420_001 Musa acuminata GSMUA_Achr6G01420_001 I 0.758
TRAES3BF062600010CFD_g Triticum aestivum TRAES3BF062600010CFD_g I 0.752
OBART01G02610 Oryza barthii OBART01G02610 I 0.752
ORGLA01G0022400 Oryza glaberrima ORGLA01G0022400 I 0.752
ONIVA01G02990 Oryza nivara ONIVA01G02990 I 0.752
OMERI01G02480 Oryza meridionalis OMERI01G02480 I 0.752
orange1.1g021945m.g Citrus sinensis orange1.1g021945m.g I 0.752
ONIVA01G02970 Oryza nivara ONIVA01G02970 I 0.752
ORGLA01G0022600 Oryza glaberrima ORGLA01G0022600 I 0.752
OGLUM01G02850 Oryza glumaepatula OGLUM01G02850 I 0.752
Ciclev10012300m.g Citrus clementina Ciclev10012300m.g I 0.752
OS01G0140700 Oryza sativa OS01G0140700 I 0.752
BGIOSGA002748 Oryza indica BGIOSGA002748 I 0.752
BGIOSGA002753 Oryza indica BGIOSGA002753 I 0.752
Bo2g138650 Brassica oleracea Bo2g138650 I 0.752
OMERI01G02500 Oryza meridionalis OMERI01G02500 I 0.752
BGIOSGA002747 Oryza indica BGIOSGA002747 I 0.752
Thhalv10004508m.g Eutrema salsugineum Thhalv10004508m.g I 0.752
ORUFI01G02680 Oryza rufipogon ORUFI01G02680 I 0.752
OS01G0141000 Oryza sativa OS01G0141000 I 0.752
TRIUR3_27886 Triticum urartu TRIUR3_27886 I 0.752
MLOC_5512 Hordeum vulgare MLOC_5512 I 0.752
ORUFI01G02660 Oryza rufipogon ORUFI01G02660 I 0.752
TRAES3BF062700040CFD_g Triticum aestivum TRAES3BF062700040CFD_g I 0.745
LPERR01G02380 Leersia perrieri LPERR01G02380 I 0.745
SELMODRAFT_110104 Selaginella moellendorffii SELMODRAFT_110104 I 0.745
SELMODRAFT_133669 Selaginella moellendorffii SELMODRAFT_133669 I 0.745
GSMUA_Achr1G05400_001 Musa acuminata GSMUA_Achr1G05400_001 I 0.745
BRADI2G02710 Brachypodium distachyon BRADI2G02710 I 0.745
Cla000872 Citrullus lanatus Cla000872 I 0.738
Pm015500 Prunus mume Pm015500 I 0.738
Bra026509 Brassica rapa Bra026509 I 0.738
Solyc04g007000.1 Solanum lycopersicum Solyc04g007000.1 I 0.738
Cucsa.147340 Cucumis sativus Cucsa.147340 I 0.738
PGSC0003DMG400007458 Solanum tuberosum PGSC0003DMG400007458 I 0.738
MLOC_75135 Hordeum vulgare MLOC_75135 I 0.738
MLOC_63261 Hordeum vulgare MLOC_63261 I 0.738
PRUPE_ppa026046mg Prunus persica PRUPE_ppa026046mg I 0.733
GSMUA_Achr8G18260_001 Musa acuminata GSMUA_Achr8G18260_001 I 0.732
Eucgr.D00053 Eucalyptus grandis Eucgr.D00053 I 0.732
TRAES3BF098300010CFD_g Triticum aestivum TRAES3BF098300010CFD_g I 0.727
Pavir.Eb00701 Panicum virgatum Pavir.Eb00701 I 0.725
BGIOSGA000982 Oryza indica BGIOSGA000982 I 0.711
Sb09g004140 Sorghum bicolor Sb09g004140 N 0.711
TCM_019508 Theobroma cacao TCM_019508 I 0.705
gene10330-v1.0-hybrid Fragaria vesca gene10330-v1.0-hybrid N 0.705
F775_20035 Aegilops tauschii F775_20035 N 0.705
GSMUA_AchrUn_randomG06880_001 Musa acuminata GSMUA_AchrUn_randomG06880_001 I 0.705
Eucgr.L01673 Eucalyptus grandis Eucgr.L01673 I 0.700