SELMODRAFT_133669 (Selaginella moellendorffii)
AP2,B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2)
PF02362 (B3)
IPR001471
IPR003340
SELMODRAFT_133669 T010516_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
RAV1
M06692_2.00
Arabidopsis thaliana
NCAACADAWWHHWHHHKDDNN

NNHHMDDDWDDWWTHTGTTGN
Dap-seq
OMalley et al.(2016)
RAV1_colamp_a
0.762 0.762
RAV1
M06693_2.00
Arabidopsis thaliana
VCAACADAWWHHAYNHB

VDNRTDDWWTHTGTTGB
Dap-seq
OMalley et al.(2016)
RAV1_col
0.762 0.762
RAV1
M02649_2.00
Arabidopsis thaliana
VNSCAACAKWDN

NHWMTGTTGSNB
SELEX
Mathelier et al.(2014)
MA0582.1
0.762 0.762
RAV1
M02650_2.00
Arabidopsis thaliana
NHCWCCTGRNNH

DNNYCAGGWGDN
SELEX
Mathelier et al.(2014)
MA0583.1
0.762 0.762
RAV1
M09748_2.00
Arabidopsis thaliana
VNSCAACAKWDN

NHWMTGTTGSNB
Transfac
Matys et al.(2006)
P$RAV1_01
0.762 0.762
RAV1
M09749_2.00
Arabidopsis thaliana
NHCWCCTGRNNH

DNNYCAGGWGDN
Transfac
Matys et al.(2006)
P$RAV1_02
0.762 0.762
ARF14
M01648_2.00
Arabidopsis thaliana
RCAACAKA

TMTGTTGY
PBM
Weirauch et al.(2014)
pTH8727
0.728 0.728
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
EFJ07460 AP2 29 78
EFJ07460 B3 159 260

Links

Other AP2,B3 family TFs
Other Selaginella moellendorffii TFs

150 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
SELMODRAFT_110104 Selaginella moellendorffii SELMODRAFT_110104 I 1.000
e_gw1.63.77.1 Physcomitrella patens e_gw1.63.77.1 I 0.842
gw1.135.126.1 Physcomitrella patens gw1.135.126.1 I 0.837
AMTR_s00007p00238950 Amborella trichopoda AMTR_s00007p00238950 I 0.813
Gorai.008G185900 Gossypium raimondii Gorai.008G185900 I 0.803
MDP0000128924 Malus domestica MDP0000128924 I 0.796
TCM_011862 Theobroma cacao TCM_011862 I 0.796
cassava12324.valid.m1 Manihot esculenta cassava12324.valid.m1 I 0.796
Thhalv10019566m.g Eutrema salsugineum Thhalv10019566m.g I 0.796
Cagra.1157s0007 Capsella grandiflora Cagra.1157s0007 I 0.796
Carubv10020536m.g Capsella rubella Carubv10020536m.g I 0.789
gene03871-v1.0-hybrid Fragaria vesca gene03871-v1.0-hybrid I 0.789
PK15652.1 Cannabis sativa PK15652.1 I 0.787
orange1.1g017035m.g Citrus sinensis orange1.1g017035m.g I 0.787
Ciclev10031846m.g Citrus clementina Ciclev10031846m.g I 0.787
29738.m001050 Ricinus communis 29738.m001050 I 0.787
POPTR_0008s11600 Populus trichocarpa POPTR_0008s11600 I 0.782
GSMUA_Achr5G09950_001 Musa acuminata GSMUA_Achr5G09950_001 I 0.780
cassava43329.valid.m1 Manihot esculenta cassava43329.valid.m1 I 0.780
POPTR_0010s13930 Populus trichocarpa POPTR_0010s13930 I 0.779
GLYMA02G11060 Glycine max GLYMA02G11060 I 0.776
SapurV1A.1001s0020 Salix purpurea SapurV1A.1001s0020 I 0.776
PGSC0003DMG400000811 Solanum tuberosum PGSC0003DMG400000811 I 0.776
PRUPE_ppa006243mg Prunus persica PRUPE_ppa006243mg I 0.776
SapurV1A.3302s0010 Salix purpurea SapurV1A.3302s0010 I 0.776
Bo3g138550 Brassica oleracea Bo3g138550 I 0.776
Pm029015 Prunus mume Pm029015 I 0.776
MDP0000939633 Malus domestica MDP0000939633 I 0.773
Cla020675 Citrullus lanatus Cla020675 I 0.773
Cucsa.283870 Cucumis sativus Cucsa.283870 I 0.773
Bostr.12659s0398 Boechera stricta Bostr.12659s0398 I 0.769
mgf019592m Mimulus guttatus mgf019592m I 0.769
Lus10041487.g Linum usitatissimum Lus10041487.g I 0.769
Gorai.013G080000 Gossypium raimondii Gorai.013G080000 I 0.769
Solyc05g009790.1 Solanum lycopersicum Solyc05g009790.1 I 0.769
RAV1 Arabidopsis lyrata scaffold_101479.1 I 0.769
RAV2 Arabidopsis lyrata fgenesh2_kg.2__1141__AT1G68840.1 I 0.767
Pavir.J13012 Panicum virgatum Pavir.J13012 I 0.767
SapurV1A.0079s0450 Salix purpurea SapurV1A.0079s0450 I 0.767
RAV2 Arabidopsis thaliana AT1G68840 D 0.767
Eucgr.B03048 Eucalyptus grandis Eucgr.B03048 I 0.767
Bostr.10273s0485 Boechera stricta Bostr.10273s0485 I 0.767
Solyc04g007000.1 Solanum lycopersicum Solyc04g007000.1 I 0.764
Aquca_002_01106 Aquilegia coerulea Aquca_002_01106 I 0.762
Aquca_026_00225 Aquilegia coerulea Aquca_026_00225 I 0.762
GSMUA_Achr6G01420_001 Musa acuminata GSMUA_Achr6G01420_001 I 0.762
Bra026917 Brassica rapa Bra026917 I 0.762
Ca_24123 Cicer arietinum Ca_24123 I 0.762
Gorai.005G138100 Gossypium raimondii Gorai.005G138100 I 0.762
Si024576m.g Setaria italica Si024576m.g I 0.762
GLYMA20G32730 Glycine max GLYMA20G32730 I 0.762
MTR_1g093600 Medicago truncatula MTR_1g093600 I 0.760
Carubv10009612m.g Capsella rubella Carubv10009612m.g I 0.760
Ca_08436 Cicer arietinum Ca_08436 I 0.760
Cagra.3501s0173 Capsella grandiflora Cagra.3501s0173 I 0.760
Pavir.Ca01826 Panicum virgatum Pavir.Ca01826 I 0.760
Thhalv10010019m.g Eutrema salsugineum Thhalv10010019m.g I 0.760
Thhalv10007983m.g Eutrema salsugineum Thhalv10007983m.g I 0.755
Bo5g043120 Brassica oleracea Bo5g043120 I 0.755
Bra019821 Brassica rapa Bra019821 I 0.753
Bra038346 Brassica rapa Bra038346 I 0.753
VIT_01s0011g03070 Vitis vinifera VIT_01s0011g03070 I 0.753
TEM1 Arabidopsis lyrata scaffold_102941.1 I 0.753
Bo5g015210 Brassica oleracea Bo5g015210 I 0.753
Bostr.13671s0120 Boechera stricta Bostr.13671s0120 I 0.753
GLYMA10G34760 Glycine max GLYMA10G34760 I 0.752
Bra024735 Brassica rapa Bra024735 I 0.752
GSMUA_Achr4G06710_001 Musa acuminata GSMUA_Achr4G06710_001 I 0.748
OPUNC05G22370 Oryza punctata OPUNC05G22370 I 0.748
OMERI05G22110 Oryza meridionalis OMERI05G22110 I 0.748
OGLUM05G26380 Oryza glumaepatula OGLUM05G26380 I 0.748
GLYMA01G22260 Glycine max GLYMA01G22260 I 0.747
Bo2g061320 Brassica oleracea Bo2g061320 I 0.747
RAV1 Arabidopsis thaliana AT1G13260 D 0.747
Bra011002 Brassica rapa Bra011002 I 0.747
MTR_5g053920 Medicago truncatula MTR_5g053920 I 0.747
Sb09g027530 Sorghum bicolor Sb09g027530 I 0.745
TRIUR3_27886 Triticum urartu TRIUR3_27886 I 0.742
LPERR05G20600 Leersia perrieri LPERR05G20600 I 0.742
OS05G0549800 Oryza sativa OS05G0549800 I 0.742
GRMZM2G159592 Zea mays GRMZM2G159592 I 0.742
Thhalv10004508m.g Eutrema salsugineum Thhalv10004508m.g I 0.742
BRADI2G47220 Brachypodium distachyon BRADI2G47220 I 0.742
GRMZM2G059939 Zea mays GRMZM2G059939 I 0.738
Carubv10019207m.g Capsella rubella Carubv10019207m.g I 0.735
Pavir.Eb02845 Panicum virgatum Pavir.Eb02845 I 0.735
PGSC0003DMG400007458 Solanum tuberosum PGSC0003DMG400007458 I 0.735
LPERR01G23470 Leersia perrieri LPERR01G23470 I 0.735
GRMZM2G169654 Zea mays GRMZM2G169654 I 0.735
ONIVA05G26000 Oryza nivara ONIVA05G26000 I 0.735
BGIOSGA020315 Oryza indica BGIOSGA020315 I 0.735
ORGLA01G0225300 Oryza glaberrima ORGLA01G0225300 I 0.733
OMERI01G25110 Oryza meridionalis OMERI01G25110 I 0.733
ONIVA01G31290 Oryza nivara ONIVA01G31290 I 0.733
OS01G0693400 Oryza sativa OS01G0693400 I 0.733
OBART01G27360 Oryza barthii OBART01G27360 I 0.733
OPUNC01G27280 Oryza punctata OPUNC01G27280 I 0.733
ORUFI01G30390 Oryza rufipogon ORUFI01G30390 I 0.733
GSMUA_Achr3G21100_001 Musa acuminata GSMUA_Achr3G21100_001 I 0.732
OGLUM01G31260 Oryza glumaepatula OGLUM01G31260 I 0.728
Pavir.Ea02092 Panicum virgatum Pavir.Ea02092 I 0.728
Sb03g031860 Sorghum bicolor Sb03g031860 I 0.728
ARF14 Arabidopsis thaliana AT3G25730 D 0.728
SELMODRAFT_71153 Selaginella moellendorffii SELMODRAFT_71153 N 0.727
SELMODRAFT_66538 Selaginella moellendorffii SELMODRAFT_66538 N 0.727
GSMUA_Achr2G22560_001 Musa acuminata GSMUA_Achr2G22560_001 I 0.725
EDF3 Arabidopsis lyrata fgenesh2_kg.5__327__AT3G25730.1 I 0.725
Cucsa.147340 Cucumis sativus Cucsa.147340 I 0.723
Si004045m.g Setaria italica Si004045m.g I 0.723
Pavir.J00384 Panicum virgatum Pavir.J00384 I 0.722
OBART01G02610 Oryza barthii OBART01G02610 I 0.721
BGIOSGA002747 Oryza indica BGIOSGA002747 I 0.721
Pavir.J23476 Panicum virgatum Pavir.J23476 I 0.721
BRADI2G02710 Brachypodium distachyon BRADI2G02710 I 0.721
Bra026509 Brassica rapa Bra026509 I 0.721
MLOC_63261 Hordeum vulgare MLOC_63261 I 0.721
OGLUM01G02850 Oryza glumaepatula OGLUM01G02850 I 0.721
ORGLA01G0022400 Oryza glaberrima ORGLA01G0022400 I 0.721
OMERI01G02480 Oryza meridionalis OMERI01G02480 I 0.721
OS01G0140700 Oryza sativa OS01G0140700 I 0.721
ONIVA01G02970 Oryza nivara ONIVA01G02970 I 0.721
ORUFI01G02660 Oryza rufipogon ORUFI01G02660 I 0.721
Bostr.0556s0243 Boechera stricta Bostr.0556s0243 I 0.720
OPUNC01G02240 Oryza punctata OPUNC01G02240 I 0.719
LPERR01G02360 Leersia perrieri LPERR01G02360 I 0.718
Cla000872 Citrullus lanatus Cla000872 I 0.718
BRADI2G17610 Brachypodium distachyon BRADI2G17610 I 0.714
GSMUA_Achr1G21250_001 Musa acuminata GSMUA_Achr1G21250_001 I 0.714
GSMUA_Achr1G05400_001 Musa acuminata GSMUA_Achr1G05400_001 I 0.714
OB01G12600 Oryza brachyantha OB01G12600 I 0.714
VIT_14s0083g00130 Vitis vinifera VIT_14s0083g00130 I 0.713
PRUPE_ppa026046mg Prunus persica PRUPE_ppa026046mg I 0.713
Lus10021707.g Linum usitatissimum Lus10021707.g I 0.711
MLOC_5512 Hordeum vulgare MLOC_5512 I 0.711
Pavir.Eb00702 Panicum virgatum Pavir.Eb00702 I 0.711
Pavir.Ea00549 Panicum virgatum Pavir.Ea00549 I 0.709
BGIOSGA002748 Oryza indica BGIOSGA002748 I 0.707
OS01G0141000 Oryza sativa OS01G0141000 I 0.707
Bo2g138650 Brassica oleracea Bo2g138650 I 0.707
BGIOSGA002753 Oryza indica BGIOSGA002753 I 0.707
ONIVA01G02990 Oryza nivara ONIVA01G02990 I 0.707
LPERR01G02380 Leersia perrieri LPERR01G02380 I 0.707
GSMUA_AchrUn_randomG06880_001 Musa acuminata GSMUA_AchrUn_randomG06880_001 I 0.707
OMERI01G02500 Oryza meridionalis OMERI01G02500 I 0.707
TRAES3BF062600010CFD_g Triticum aestivum TRAES3BF062600010CFD_g I 0.707
Si001909m.g Setaria italica Si001909m.g I 0.707
ORUFI01G02680 Oryza rufipogon ORUFI01G02680 I 0.707
TRAES3BF062700040CFD_g Triticum aestivum TRAES3BF062700040CFD_g I 0.701
Pavir.Ca01165 Panicum virgatum Pavir.Ca01165 I 0.700
Pm015500 Prunus mume Pm015500 I 0.700