Si001909m.g (Setaria italica)
AP2,B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2)
PF02362 (B3)
IPR001471
IPR003340
Si001909m.g T010519_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
RAV1
M06692_2.00
Arabidopsis thaliana
NCAACADAWWHHWHHHKDDNN

NNHHMDDDWDDWWTHTGTTGN
Dap-seq
OMalley et al.(2016)
RAV1_colamp_a
0.740 0.740
RAV1
M06693_2.00
Arabidopsis thaliana
VCAACADAWWHHAYNHB

VDNRTDDWWTHTGTTGB
Dap-seq
OMalley et al.(2016)
RAV1_col
0.740 0.740
RAV1
M02649_2.00
Arabidopsis thaliana
VNSCAACAKWDN

NHWMTGTTGSNB
SELEX
Mathelier et al.(2014)
MA0582.1
0.740 0.740
RAV1
M02650_2.00
Arabidopsis thaliana
NHCWCCTGRNNH

DNNYCAGGWGDN
SELEX
Mathelier et al.(2014)
MA0583.1
0.740 0.740
RAV1
M09748_2.00
Arabidopsis thaliana
VNSCAACAKWDN

NHWMTGTTGSNB
Transfac
Matys et al.(2006)
P$RAV1_01
0.740 0.740
RAV1
M09749_2.00
Arabidopsis thaliana
NHCWCCTGRNNH

DNNYCAGGWGDN
Transfac
Matys et al.(2006)
P$RAV1_02
0.740 0.740
ARF14
M01648_2.00
Arabidopsis thaliana
RCAACAKA

TMTGTTGY
PBM
Weirauch et al.(2014)
pTH8727
0.720 0.720
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Si001909m AP2 75 124
Si001909m B3 190 297

Links

Other AP2,B3 family TFs
Other Setaria italica TFs

167 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Pavir.Eb00702 Panicum virgatum Pavir.Eb00702 I 0.926
Pavir.J23476 Panicum virgatum Pavir.J23476 I 0.920
Pavir.Ea00549 Panicum virgatum Pavir.Ea00549 I 0.919
Sb03g006590 Sorghum bicolor Sb03g006590 I 0.919
Traes_3B_90BE2090B Triticum aestivum Traes_3B_90BE2090B I 0.913
MLOC_7940 Hordeum vulgare MLOC_7940 I 0.913
TRAES3BF098200010CFD_g Triticum aestivum TRAES3BF098200010CFD_g I 0.900
Traes_3B_DF7E924991 Triticum aestivum Traes_3B_DF7E924991 I 0.900
TRAES3BF108500010CFD_g Triticum aestivum TRAES3BF108500010CFD_g I 0.900
Traes_3B_DF7E92499 Triticum aestivum Traes_3B_DF7E92499 I 0.900
TRIUR3_24851 Triticum urartu TRIUR3_24851 I 0.899
BRADI2G02720 Brachypodium distachyon BRADI2G02720 I 0.887
MLOC_56567 Hordeum vulgare MLOC_56567 I 0.886
OS01G0141000 Oryza sativa OS01G0141000 I 0.860
ORUFI01G02680 Oryza rufipogon ORUFI01G02680 I 0.860
OMERI01G02500 Oryza meridionalis OMERI01G02500 I 0.860
BGIOSGA002748 Oryza indica BGIOSGA002748 I 0.860
ONIVA01G02990 Oryza nivara ONIVA01G02990 I 0.860
ORGLA01G0022600 Oryza glaberrima ORGLA01G0022600 I 0.860
BGIOSGA002753 Oryza indica BGIOSGA002753 I 0.860
MLOC_75135 Hordeum vulgare MLOC_75135 I 0.853
OPUNC01G02240 Oryza punctata OPUNC01G02240 I 0.849
BRADI2G02710 Brachypodium distachyon BRADI2G02710 I 0.847
TRAES3BF098300010CFD_g Triticum aestivum TRAES3BF098300010CFD_g I 0.847
LPERR01G02380 Leersia perrieri LPERR01G02380 I 0.847
OB01G12600 Oryza brachyantha OB01G12600 I 0.845
Pavir.J00384 Panicum virgatum Pavir.J00384 I 0.833
OS01G0140700 Oryza sativa OS01G0140700 I 0.827
ONIVA01G02970 Oryza nivara ONIVA01G02970 I 0.827
BGIOSGA002747 Oryza indica BGIOSGA002747 I 0.827
OMERI01G02480 Oryza meridionalis OMERI01G02480 I 0.827
ORUFI01G02660 Oryza rufipogon ORUFI01G02660 I 0.827
OGLUM01G02850 Oryza glumaepatula OGLUM01G02850 I 0.827
ORGLA01G0022400 Oryza glaberrima ORGLA01G0022400 I 0.827
OBART01G02610 Oryza barthii OBART01G02610 I 0.827
LPERR01G02360 Leersia perrieri LPERR01G02360 I 0.826
Pavir.Ca01165 Panicum virgatum Pavir.Ca01165 I 0.823
MLOC_5512 Hordeum vulgare MLOC_5512 I 0.819
Pavir.Eb00701 Panicum virgatum Pavir.Eb00701 I 0.819
TRIUR3_27886 Triticum urartu TRIUR3_27886 I 0.807
TRAES3BF062700040CFD_g Triticum aestivum TRAES3BF062700040CFD_g I 0.803
F775_20035 Aegilops tauschii F775_20035 N 0.800
Pavir.Ca01826 Panicum virgatum Pavir.Ca01826 I 0.795
Pavir.J13012 Panicum virgatum Pavir.J13012 I 0.795
TRAES3BF062600010CFD_g Triticum aestivum TRAES3BF062600010CFD_g I 0.793
MTR_5g053920 Medicago truncatula MTR_5g053920 I 0.793
GSMUA_Achr5G09950_001 Musa acuminata GSMUA_Achr5G09950_001 I 0.793
Cla020675 Citrullus lanatus Cla020675 I 0.787
Ca_24123 Cicer arietinum Ca_24123 I 0.787
Cucsa.283870 Cucumis sativus Cucsa.283870 I 0.787
MLOC_63261 Hordeum vulgare MLOC_63261 I 0.780
GSMUA_Achr4G06710_001 Musa acuminata GSMUA_Achr4G06710_001 I 0.780
SapurV1A.0079s0450 Salix purpurea SapurV1A.0079s0450 I 0.773
AMTR_s00007p00238950 Amborella trichopoda AMTR_s00007p00238950 I 0.773
Si024576m.g Setaria italica Si024576m.g I 0.773
Gorai.013G080000 Gossypium raimondii Gorai.013G080000 I 0.773
RAV2 Arabidopsis thaliana AT1G68840 D 0.773
Sb09g027530 Sorghum bicolor Sb09g027530 I 0.772
GRMZM2G059939 Zea mays GRMZM2G059939 I 0.772
Lus10021707.g Linum usitatissimum Lus10021707.g I 0.772
PK15652.1 Cannabis sativa PK15652.1 I 0.767
VIT_01s0011g03070 Vitis vinifera VIT_01s0011g03070 I 0.767
PGSC0003DMG400000811 Solanum tuberosum PGSC0003DMG400000811 I 0.767
Cagra.1157s0007 Capsella grandiflora Cagra.1157s0007 I 0.767
MDP0000128924 Malus domestica MDP0000128924 I 0.767
POPTR_0008s11600 Populus trichocarpa POPTR_0008s11600 I 0.767
GSMUA_Achr2G22560_001 Musa acuminata GSMUA_Achr2G22560_001 I 0.765
GSMUA_Achr3G21100_001 Musa acuminata GSMUA_Achr3G21100_001 I 0.765
OPUNC01G02270 Oryza punctata OPUNC01G02270 N 0.762
Lus10041487.g Linum usitatissimum Lus10041487.g I 0.760
GLYMA02G11060 Glycine max GLYMA02G11060 I 0.760
PRUPE_ppa006243mg Prunus persica PRUPE_ppa006243mg I 0.760
Bostr.10273s0485 Boechera stricta Bostr.10273s0485 I 0.760
Carubv10020536m.g Capsella rubella Carubv10020536m.g I 0.760
OBART01G27360 Oryza barthii OBART01G27360 I 0.760
Thhalv10019566m.g Eutrema salsugineum Thhalv10019566m.g I 0.760
OS01G0693400 Oryza sativa OS01G0693400 I 0.760
Pm029015 Prunus mume Pm029015 I 0.760
ORGLA01G0225300 Oryza glaberrima ORGLA01G0225300 I 0.760
OPUNC01G27280 Oryza punctata OPUNC01G27280 I 0.760
OMERI01G25110 Oryza meridionalis OMERI01G25110 I 0.760
RAV2 Arabidopsis lyrata fgenesh2_kg.2__1141__AT1G68840.1 I 0.760
ONIVA01G31290 Oryza nivara ONIVA01G31290 I 0.760
ORUFI01G30390 Oryza rufipogon ORUFI01G30390 I 0.760
GLYMA10G34760 Glycine max GLYMA10G34760 I 0.758
BRADI2G47220 Brachypodium distachyon BRADI2G47220 I 0.755
LPERR01G23470 Leersia perrieri LPERR01G23470 I 0.755
Aquca_026_00225 Aquilegia coerulea Aquca_026_00225 I 0.753
GRMZM2G169654 Zea mays GRMZM2G169654 I 0.753
cassava43329.valid.m1 Manihot esculenta cassava43329.valid.m1 I 0.753
Aquca_002_01106 Aquilegia coerulea Aquca_002_01106 I 0.753
gene03871-v1.0-hybrid Fragaria vesca gene03871-v1.0-hybrid I 0.753
Solyc05g009790.1 Solanum lycopersicum Solyc05g009790.1 I 0.753
SapurV1A.1001s0020 Salix purpurea SapurV1A.1001s0020 I 0.753
OGLUM05G26380 Oryza glumaepatula OGLUM05G26380 I 0.753
OMERI05G22110 Oryza meridionalis OMERI05G22110 I 0.753
OPUNC05G22370 Oryza punctata OPUNC05G22370 I 0.753
MTR_1g093600 Medicago truncatula MTR_1g093600 I 0.753
LPERR05G20600 Leersia perrieri LPERR05G20600 I 0.753
SapurV1A.3302s0010 Salix purpurea SapurV1A.3302s0010 I 0.753
Gorai.008G185900 Gossypium raimondii Gorai.008G185900 I 0.747
Carubv10009612m.g Capsella rubella Carubv10009612m.g I 0.747
Ciclev10031846m.g Citrus clementina Ciclev10031846m.g I 0.747
Cagra.3501s0173 Capsella grandiflora Cagra.3501s0173 I 0.747
RAV1 Arabidopsis lyrata scaffold_101479.1 I 0.747
29738.m001050 Ricinus communis 29738.m001050 I 0.747
Eucgr.B03048 Eucalyptus grandis Eucgr.B03048 I 0.747
Bostr.12659s0398 Boechera stricta Bostr.12659s0398 I 0.747
GSMUA_Achr6G01420_001 Musa acuminata GSMUA_Achr6G01420_001 I 0.747
mgf019592m Mimulus guttatus mgf019592m I 0.747
orange1.1g017035m.g Citrus sinensis orange1.1g017035m.g I 0.747
Thhalv10010019m.g Eutrema salsugineum Thhalv10010019m.g I 0.747
TCM_011862 Theobroma cacao TCM_011862 I 0.747
OS05G0549800 Oryza sativa OS05G0549800 I 0.747
MDP0000939633 Malus domestica MDP0000939633 I 0.747
GLYMA20G32730 Glycine max GLYMA20G32730 I 0.747
BGIOSGA020315 Oryza indica BGIOSGA020315 I 0.745
POPTR_0010s13930 Populus trichocarpa POPTR_0010s13930 I 0.745
ONIVA05G26000 Oryza nivara ONIVA05G26000 I 0.745
Cucsa.147340 Cucumis sativus Cucsa.147340 I 0.743
Bostr.13671s0120 Boechera stricta Bostr.13671s0120 I 0.740
Bra011002 Brassica rapa Bra011002 I 0.740
cassava12324.valid.m1 Manihot esculenta cassava12324.valid.m1 I 0.740
RAV1 Arabidopsis thaliana AT1G13260 D 0.740
Thhalv10007983m.g Eutrema salsugineum Thhalv10007983m.g I 0.740
OGLUM01G31260 Oryza glumaepatula OGLUM01G31260 I 0.740
GLYMA01G22260 Glycine max GLYMA01G22260 I 0.740
Ca_08436 Cicer arietinum Ca_08436 I 0.740
Si004045m.g Setaria italica Si004045m.g I 0.736
Bo5g015210 Brassica oleracea Bo5g015210 I 0.733
Bra019821 Brassica rapa Bra019821 I 0.733
Thhalv10004508m.g Eutrema salsugineum Thhalv10004508m.g I 0.733
BRADI2G17610 Brachypodium distachyon BRADI2G17610 I 0.733
GSMUA_Achr1G21250_001 Musa acuminata GSMUA_Achr1G21250_001 I 0.733
Sb03g031860 Sorghum bicolor Sb03g031860 I 0.733
Sb09g004140 Sorghum bicolor Sb09g004140 N 0.733
Bra026917 Brassica rapa Bra026917 I 0.733
Bra024735 Brassica rapa Bra024735 I 0.732
Cla000872 Citrullus lanatus Cla000872 I 0.732
Bo5g043120 Brassica oleracea Bo5g043120 I 0.732
EDF3 Arabidopsis lyrata fgenesh2_kg.5__327__AT3G25730.1 I 0.732
Pavir.Eb02845 Panicum virgatum Pavir.Eb02845 I 0.727
TEM1 Arabidopsis lyrata scaffold_102941.1 I 0.727
Bo3g138550 Brassica oleracea Bo3g138550 I 0.720
GRMZM2G159592 Zea mays GRMZM2G159592 I 0.720
Bo2g061320 Brassica oleracea Bo2g061320 I 0.720
Carubv10019207m.g Capsella rubella Carubv10019207m.g I 0.720
Pavir.Ea02092 Panicum virgatum Pavir.Ea02092 I 0.720
Bra038346 Brassica rapa Bra038346 I 0.720
ARF14 Arabidopsis thaliana AT3G25730 D 0.720
Si012228m.g Setaria italica Si012228m.g N 0.718
GSMUA_Achr8G18260_001 Musa acuminata GSMUA_Achr8G18260_001 I 0.717
Solyc04g007000.1 Solanum lycopersicum Solyc04g007000.1 I 0.715
Ciclev10012300m.g Citrus clementina Ciclev10012300m.g I 0.714
PGSC0003DMG400007458 Solanum tuberosum PGSC0003DMG400007458 I 0.713
Pm015500 Prunus mume Pm015500 I 0.713
Gorai.005G138100 Gossypium raimondii Gorai.005G138100 I 0.713
VIT_14s0083g00130 Vitis vinifera VIT_14s0083g00130 I 0.713
Bo2g138650 Brassica oleracea Bo2g138650 I 0.713
PRUPE_ppa026046mg Prunus persica PRUPE_ppa026046mg I 0.707
SELMODRAFT_133669 Selaginella moellendorffii SELMODRAFT_133669 I 0.707
SELMODRAFT_110104 Selaginella moellendorffii SELMODRAFT_110104 I 0.707
Bostr.0556s0243 Boechera stricta Bostr.0556s0243 I 0.707
BGIOSGA000982 Oryza indica BGIOSGA000982 I 0.705
Eucgr.D00053 Eucalyptus grandis Eucgr.D00053 I 0.700
GSMUA_Achr1G05400_001 Musa acuminata GSMUA_Achr1G05400_001 I 0.700
Bra026509 Brassica rapa Bra026509 I 0.700