Si024576m.g (Setaria italica)
AP2,B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2)
PF02362 (B3)
IPR001471
IPR003340
Si024576m.g T010522_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
RAV1
M06692_2.00
Arabidopsis thaliana
NCAACADAWWHHWHHHKDDNN

NNHHMDDDWDDWWTHTGTTGN
Dap-seq
OMalley et al.(2016)
RAV1_colamp_a
0.788 0.788
RAV1
M06693_2.00
Arabidopsis thaliana
VCAACADAWWHHAYNHB

VDNRTDDWWTHTGTTGB
Dap-seq
OMalley et al.(2016)
RAV1_col
0.788 0.788
RAV1
M02649_2.00
Arabidopsis thaliana
VNSCAACAKWDN

NHWMTGTTGSNB
SELEX
Mathelier et al.(2014)
MA0582.1
0.788 0.788
RAV1
M02650_2.00
Arabidopsis thaliana
NHCWCCTGRNNH

DNNYCAGGWGDN
SELEX
Mathelier et al.(2014)
MA0583.1
0.788 0.788
RAV1
M09748_2.00
Arabidopsis thaliana
VNSCAACAKWDN

NHWMTGTTGSNB
Transfac
Matys et al.(2006)
P$RAV1_01
0.788 0.788
RAV1
M09749_2.00
Arabidopsis thaliana
NHCWCCTGRNNH

DNNYCAGGWGDN
Transfac
Matys et al.(2006)
P$RAV1_02
0.788 0.788
ARF14
M01648_2.00
Arabidopsis thaliana
RCAACAKA

TMTGTTGY
PBM
Weirauch et al.(2014)
pTH8727
0.760 0.760
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Si024576m AP2 76 125
Si024576m B3 206 312

Links

Other AP2,B3 family TFs
Other Setaria italica TFs

170 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Pavir.J13012 Panicum virgatum Pavir.J13012 I 0.993
Pavir.Ca01826 Panicum virgatum Pavir.Ca01826 I 0.986
GRMZM2G059939 Zea mays GRMZM2G059939 I 0.933
Sb09g027530 Sorghum bicolor Sb09g027530 I 0.926
OGLUM05G26380 Oryza glumaepatula OGLUM05G26380 I 0.925
OMERI05G22110 Oryza meridionalis OMERI05G22110 I 0.925
OPUNC05G22370 Oryza punctata OPUNC05G22370 I 0.925
OS05G0549800 Oryza sativa OS05G0549800 I 0.918
BGIOSGA020315 Oryza indica BGIOSGA020315 I 0.893
ONIVA05G26000 Oryza nivara ONIVA05G26000 I 0.893
GRMZM2G159592 Zea mays GRMZM2G159592 I 0.890
LPERR01G23470 Leersia perrieri LPERR01G23470 I 0.878
GRMZM2G169654 Zea mays GRMZM2G169654 I 0.877
OMERI01G25110 Oryza meridionalis OMERI01G25110 I 0.870
OBART01G27360 Oryza barthii OBART01G27360 I 0.870
ONIVA01G31290 Oryza nivara ONIVA01G31290 I 0.870
ORUFI01G30390 Oryza rufipogon ORUFI01G30390 I 0.870
ORGLA01G0225300 Oryza glaberrima ORGLA01G0225300 I 0.870
OPUNC01G27280 Oryza punctata OPUNC01G27280 I 0.870
OS01G0693400 Oryza sativa OS01G0693400 I 0.870
BRADI2G47220 Brachypodium distachyon BRADI2G47220 I 0.864
LPERR05G20600 Leersia perrieri LPERR05G20600 I 0.863
OGLUM01G31260 Oryza glumaepatula OGLUM01G31260 I 0.863
Sb03g031860 Sorghum bicolor Sb03g031860 I 0.849
Pavir.Eb02845 Panicum virgatum Pavir.Eb02845 I 0.836
Ca_24123 Cicer arietinum Ca_24123 I 0.829
Pm029015 Prunus mume Pm029015 I 0.829
PRUPE_ppa006243mg Prunus persica PRUPE_ppa006243mg I 0.829
GLYMA02G11060 Glycine max GLYMA02G11060 I 0.829
GSMUA_Achr5G09950_001 Musa acuminata GSMUA_Achr5G09950_001 I 0.827
GLYMA20G32730 Glycine max GLYMA20G32730 I 0.822
BRADI2G17610 Brachypodium distachyon BRADI2G17610 I 0.822
POPTR_0008s11600 Populus trichocarpa POPTR_0008s11600 I 0.822
Lus10041487.g Linum usitatissimum Lus10041487.g I 0.822
gene03871-v1.0-hybrid Fragaria vesca gene03871-v1.0-hybrid I 0.822
Thhalv10007983m.g Eutrema salsugineum Thhalv10007983m.g I 0.822
BGIOSGA000982 Oryza indica BGIOSGA000982 I 0.818
Pavir.Ea02092 Panicum virgatum Pavir.Ea02092 I 0.815
Gorai.013G080000 Gossypium raimondii Gorai.013G080000 I 0.815
PGSC0003DMG400000811 Solanum tuberosum PGSC0003DMG400000811 I 0.815
PK15652.1 Cannabis sativa PK15652.1 I 0.813
MTR_5g053920 Medicago truncatula MTR_5g053920 I 0.813
GLYMA10G34760 Glycine max GLYMA10G34760 I 0.812
Si004045m.g Setaria italica Si004045m.g I 0.811
GSMUA_Achr4G06710_001 Musa acuminata GSMUA_Achr4G06710_001 I 0.810
cassava12324.valid.m1 Manihot esculenta cassava12324.valid.m1 I 0.808
Gorai.008G185900 Gossypium raimondii Gorai.008G185900 I 0.808
Aquca_026_00225 Aquilegia coerulea Aquca_026_00225 I 0.808
Solyc05g009790.1 Solanum lycopersicum Solyc05g009790.1 I 0.808
TCM_011862 Theobroma cacao TCM_011862 I 0.808
Ca_08436 Cicer arietinum Ca_08436 I 0.807
MDP0000128924 Malus domestica MDP0000128924 I 0.807
MTR_1g093600 Medicago truncatula MTR_1g093600 I 0.807
Cagra.1157s0007 Capsella grandiflora Cagra.1157s0007 I 0.801
Thhalv10019566m.g Eutrema salsugineum Thhalv10019566m.g I 0.801
Carubv10020536m.g Capsella rubella Carubv10020536m.g I 0.801
SapurV1A.0079s0450 Salix purpurea SapurV1A.0079s0450 I 0.800
cassava43329.valid.m1 Manihot esculenta cassava43329.valid.m1 I 0.800
29738.m001050 Ricinus communis 29738.m001050 I 0.800
MDP0000939633 Malus domestica MDP0000939633 I 0.800
Aquca_002_01106 Aquilegia coerulea Aquca_002_01106 I 0.795
SapurV1A.1001s0020 Salix purpurea SapurV1A.1001s0020 I 0.793
SapurV1A.3302s0010 Salix purpurea SapurV1A.3302s0010 I 0.793
VIT_01s0011g03070 Vitis vinifera VIT_01s0011g03070 I 0.793
GLYMA01G22260 Glycine max GLYMA01G22260 I 0.793
RAV2 Arabidopsis thaliana AT1G68840 D 0.793
POPTR_0010s13930 Populus trichocarpa POPTR_0010s13930 I 0.792
Pavir.J23476 Panicum virgatum Pavir.J23476 I 0.788
mgf019592m Mimulus guttatus mgf019592m I 0.788
GSMUA_Achr1G21250_001 Musa acuminata GSMUA_Achr1G21250_001 I 0.788
Bra026917 Brassica rapa Bra026917 I 0.788
Cla020675 Citrullus lanatus Cla020675 I 0.787
Cucsa.283870 Cucumis sativus Cucsa.283870 I 0.787
orange1.1g017035m.g Citrus sinensis orange1.1g017035m.g I 0.787
RAV2 Arabidopsis lyrata fgenesh2_kg.2__1141__AT1G68840.1 I 0.787
Ciclev10031846m.g Citrus clementina Ciclev10031846m.g I 0.787
Bostr.10273s0485 Boechera stricta Bostr.10273s0485 I 0.787
Pavir.J00384 Panicum virgatum Pavir.J00384 I 0.786
TRAES3BF108500010CFD_g Triticum aestivum TRAES3BF108500010CFD_g I 0.781
TRAES3BF098200010CFD_g Triticum aestivum TRAES3BF098200010CFD_g I 0.781
Traes_3B_DF7E92499 Triticum aestivum Traes_3B_DF7E92499 I 0.781
Traes_3B_DF7E924991 Triticum aestivum Traes_3B_DF7E924991 I 0.781
Bo3g138550 Brassica oleracea Bo3g138550 I 0.781
BRADI2G02720 Brachypodium distachyon BRADI2G02720 I 0.780
Eucgr.B03048 Eucalyptus grandis Eucgr.B03048 I 0.780
Pavir.Eb00702 Panicum virgatum Pavir.Eb00702 I 0.779
GSMUA_Achr2G22560_001 Musa acuminata GSMUA_Achr2G22560_001 I 0.779
BGIOSGA002747 Oryza indica BGIOSGA002747 I 0.774
Gorai.005G138100 Gossypium raimondii Gorai.005G138100 I 0.774
TRIUR3_27886 Triticum urartu TRIUR3_27886 I 0.774
OGLUM01G02850 Oryza glumaepatula OGLUM01G02850 I 0.774
OBART01G02610 Oryza barthii OBART01G02610 I 0.774
ORUFI01G02660 Oryza rufipogon ORUFI01G02660 I 0.774
ORGLA01G0022400 Oryza glaberrima ORGLA01G0022400 I 0.774
ONIVA01G02970 Oryza nivara ONIVA01G02970 I 0.774
OPUNC01G02240 Oryza punctata OPUNC01G02240 I 0.774
OMERI01G02480 Oryza meridionalis OMERI01G02480 I 0.774
OS01G0140700 Oryza sativa OS01G0140700 I 0.774
Bra011002 Brassica rapa Bra011002 I 0.773
Carubv10009612m.g Capsella rubella Carubv10009612m.g I 0.773
Cagra.3501s0173 Capsella grandiflora Cagra.3501s0173 I 0.773
Bostr.13671s0120 Boechera stricta Bostr.13671s0120 I 0.773
AMTR_s00007p00238950 Amborella trichopoda AMTR_s00007p00238950 I 0.773
Bostr.12659s0398 Boechera stricta Bostr.12659s0398 I 0.773
Thhalv10010019m.g Eutrema salsugineum Thhalv10010019m.g I 0.773
Si001909m.g Setaria italica Si001909m.g I 0.773
RAV1 Arabidopsis lyrata scaffold_101479.1 I 0.773
TEM1 Arabidopsis lyrata scaffold_102941.1 I 0.773
LPERR01G02360 Leersia perrieri LPERR01G02360 I 0.772
MLOC_7940 Hordeum vulgare MLOC_7940 I 0.772
GSMUA_Achr3G21100_001 Musa acuminata GSMUA_Achr3G21100_001 I 0.772
Traes_3B_90BE2090B Triticum aestivum Traes_3B_90BE2090B I 0.772
Sb03g006590 Sorghum bicolor Sb03g006590 I 0.772
OB01G12600 Oryza brachyantha OB01G12600 I 0.770
Pavir.Ea00549 Panicum virgatum Pavir.Ea00549 I 0.770
Pavir.Ca01165 Panicum virgatum Pavir.Ca01165 I 0.769
TRAES3BF062600010CFD_g Triticum aestivum TRAES3BF062600010CFD_g I 0.769
Bra019821 Brassica rapa Bra019821 I 0.767
Bo5g015210 Brassica oleracea Bo5g015210 I 0.767
BRADI2G02710 Brachypodium distachyon BRADI2G02710 I 0.767
RAV1 Arabidopsis thaliana AT1G13260 D 0.767
PGSC0003DMG400007458 Solanum tuberosum PGSC0003DMG400007458 I 0.767
Solyc04g007000.1 Solanum lycopersicum Solyc04g007000.1 I 0.764
SELMODRAFT_133669 Selaginella moellendorffii SELMODRAFT_133669 I 0.762
SELMODRAFT_110104 Selaginella moellendorffii SELMODRAFT_110104 I 0.762
TRAES3BF062700040CFD_g Triticum aestivum TRAES3BF062700040CFD_g I 0.762
MLOC_63261 Hordeum vulgare MLOC_63261 I 0.760
GSMUA_Achr6G01420_001 Musa acuminata GSMUA_Achr6G01420_001 I 0.760
ARF14 Arabidopsis thaliana AT3G25730 D 0.760
TRIUR3_24851 Triticum urartu TRIUR3_24851 I 0.758
MLOC_5512 Hordeum vulgare MLOC_5512 I 0.758
Bo5g043120 Brassica oleracea Bo5g043120 I 0.758
Bra024735 Brassica rapa Bra024735 I 0.758
VIT_14s0083g00130 Vitis vinifera VIT_14s0083g00130 I 0.753
Bra038346 Brassica rapa Bra038346 I 0.753
Lus10021707.g Linum usitatissimum Lus10021707.g I 0.752
EDF3 Arabidopsis lyrata fgenesh2_kg.5__327__AT3G25730.1 I 0.752
MLOC_56567 Hordeum vulgare MLOC_56567 I 0.752
Ciclev10012300m.g Citrus clementina Ciclev10012300m.g I 0.748
ONIVA01G02990 Oryza nivara ONIVA01G02990 I 0.747
BGIOSGA002753 Oryza indica BGIOSGA002753 I 0.747
ORUFI01G02680 Oryza rufipogon ORUFI01G02680 I 0.747
OS01G0141000 Oryza sativa OS01G0141000 I 0.747
GSMUA_Achr1G05400_001 Musa acuminata GSMUA_Achr1G05400_001 I 0.747
orange1.1g021945m.g Citrus sinensis orange1.1g021945m.g I 0.747
Bo2g061320 Brassica oleracea Bo2g061320 I 0.747
OMERI01G02500 Oryza meridionalis OMERI01G02500 I 0.747
BGIOSGA002748 Oryza indica BGIOSGA002748 I 0.747
Carubv10019207m.g Capsella rubella Carubv10019207m.g I 0.740
gw1.135.126.1 Physcomitrella patens gw1.135.126.1 I 0.738
GSMUA_Achr8G18260_001 Musa acuminata GSMUA_Achr8G18260_001 I 0.738
Cucsa.147340 Cucumis sativus Cucsa.147340 I 0.736
Thhalv10004508m.g Eutrema salsugineum Thhalv10004508m.g I 0.733
Bostr.0556s0243 Boechera stricta Bostr.0556s0243 I 0.733
Bra026509 Brassica rapa Bra026509 I 0.733
MLOC_75135 Hordeum vulgare MLOC_75135 I 0.733
Cla000872 Citrullus lanatus Cla000872 I 0.732
Pavir.Eb00701 Panicum virgatum Pavir.Eb00701 I 0.732
ORGLA01G0022600 Oryza glaberrima ORGLA01G0022600 I 0.727
Bo2g138650 Brassica oleracea Bo2g138650 I 0.727
GSMUA_AchrUn_randomG06880_001 Musa acuminata GSMUA_AchrUn_randomG06880_001 I 0.726
TRAES3BF098300010CFD_g Triticum aestivum TRAES3BF098300010CFD_g I 0.720
PRUPE_ppa026046mg Prunus persica PRUPE_ppa026046mg I 0.720
LPERR01G02380 Leersia perrieri LPERR01G02380 I 0.720
Pm015500 Prunus mume Pm015500 I 0.720
e_gw1.63.77.1 Physcomitrella patens e_gw1.63.77.1 I 0.712
Eucgr.D00053 Eucalyptus grandis Eucgr.D00053 I 0.707
gene10330-v1.0-hybrid Fragaria vesca gene10330-v1.0-hybrid N 0.707
TCM_019508 Theobroma cacao TCM_019508 I 0.705
MDP0000945267 Malus domestica MDP0000945267 I 0.700