CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
29650.m000279
(
Ricinus communis
)
AP2,B3
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00847 (AP2)
PF02362 (B3)
IPR001471
IPR003340
29650.m000279
T010554_2.00
JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
29650.m000279
AP2
51
100
AKFKGVVPQQNGHWGAQIYANHQRIWLGTFKSEKEAAMAYDSAAIKLRSG
29650.m000279
B3
178
293
FQKELTPSDVGKLNRLVIPKKFAVKYFPYISGNGEEEGEEEEEKVVGAPSVLDDIELVFYDRLMKCWKFRYCYWRSSQSFVFTRGWNRFVKEKNLKEKDIITFYACASPDNRVQEG
Links
Other
AP2,B3
family TFs
Other
Ricinus communis
TFs
28 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
cassava27051.m1
Manihot esculenta
cassava27051.m1
N
0.859
cassava14279.m1
Manihot esculenta
cassava14279.m1
N
0.843
PRUPE_ppa026651mg
Prunus persica
PRUPE_ppa026651mg
N
0.821
Pm028198
Prunus mume
Pm028198
N
0.821
Ciclev10017535m.g
Citrus clementina
Ciclev10017535m.g
N
0.817
orange1.1g046898m.g
Citrus sinensis
orange1.1g046898m.g
N
0.817
SapurV1A.0009s0070
Salix purpurea
SapurV1A.0009s0070
N
0.796
gene24427-v1.0-hybrid
Fragaria vesca
gene24427-v1.0-hybrid
N
0.792
evm.TU.contig_32277
Carica papaya
evm.TU.contig_32277
N
0.788
POPTR_0003s21810
Populus trichocarpa
POPTR_0003s21810
N
0.786
Gorai.013G249100
Gossypium raimondii
Gorai.013G249100
N
0.779
LjSGA_031594.1
Lotus japonicus
LjSGA_031594.1
N
0.772
Bo3g179890
Brassica oleracea
Bo3g179890
N
0.768
VIT_11s0037g00010
Vitis vinifera
VIT_11s0037g00010
N
0.766
Bra014282
Brassica rapa
Bra014282
N
0.761
orange1.1g018549m.g
Citrus sinensis
orange1.1g018549m.g
N
0.759
Eucgr.C00358
Eucalyptus grandis
Eucgr.C00358
N
0.759
Cucsa.350980
Cucumis sativus
Cucsa.350980
N
0.752
Ciclev10010403m.g
Citrus clementina
Ciclev10010403m.g
N
0.752
Cla019009
Citrullus lanatus
Cla019009
N
0.752
Aquca_011_00122
Aquilegia coerulea
Aquca_011_00122
N
0.723
PK28088.1
Cannabis sativa
PK28088.1
N
0.717
SapurV1A.2134s0020
Salix purpurea
SapurV1A.2134s0020
N
0.717
28008.m000029
Ricinus communis
28008.m000029
N
0.717
cassava8667.m1
Manihot esculenta
cassava8667.m1
N
0.710
Bra018868
Brassica rapa
Bra018868
N
0.706
Lus10036282.g
Linum usitatissimum
Lus10036282.g
N
0.703
Bra018894
Brassica rapa
Bra018894
N
0.701