CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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cassava14279.m1
(
Manihot esculenta
)
AP2,B3
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00847 (AP2)
PF02362 (B3)
IPR001471
IPR003340
cassava14279.m1
T010557_2.00
JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
cassava14279.m1
AP2
54
103
AKFKGVVPQHNGHWGAQIYAKHQRIWLGTFKSEKEAAMAYDSAAIKIRSG
cassava14279.m1
B3
187
298
FQKELTPSDVGKLNRLVIPKKFAVKYFPYISGNMENDKEHGLGHGLEDVELVFYDRLMKSWKFRYCYWRSSQSFVFTRGWNRFVKEKNLKEKDIVTFYACVSSQRIQEGQQF
Links
Other
AP2,B3
family TFs
Other
Manihot esculenta
TFs
25 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
29650.m000279
Ricinus communis
29650.m000279
N
0.843
cassava27051.m1
Manihot esculenta
cassava27051.m1
N
0.800
Gorai.013G249100
Gossypium raimondii
Gorai.013G249100
N
0.786
Pm028198
Prunus mume
Pm028198
N
0.779
PRUPE_ppa026651mg
Prunus persica
PRUPE_ppa026651mg
N
0.779
POPTR_0003s21810
Populus trichocarpa
POPTR_0003s21810
N
0.779
orange1.1g046898m.g
Citrus sinensis
orange1.1g046898m.g
N
0.771
Ciclev10017535m.g
Citrus clementina
Ciclev10017535m.g
N
0.771
SapurV1A.0009s0070
Salix purpurea
SapurV1A.0009s0070
N
0.764
Eucgr.C00358
Eucalyptus grandis
Eucgr.C00358
N
0.757
gene24427-v1.0-hybrid
Fragaria vesca
gene24427-v1.0-hybrid
N
0.757
VIT_11s0037g00010
Vitis vinifera
VIT_11s0037g00010
N
0.750
Ciclev10010403m.g
Citrus clementina
Ciclev10010403m.g
N
0.750
orange1.1g018549m.g
Citrus sinensis
orange1.1g018549m.g
N
0.750
evm.TU.contig_32277
Carica papaya
evm.TU.contig_32277
N
0.747
Aquca_011_00122
Aquilegia coerulea
Aquca_011_00122
N
0.736
Aquca_142_00013
Aquilegia coerulea
Aquca_142_00013
N
0.729
Cla019009
Citrullus lanatus
Cla019009
N
0.729
LjSGA_031594.1
Lotus japonicus
LjSGA_031594.1
N
0.721
Cucsa.350980
Cucumis sativus
Cucsa.350980
N
0.721
Bra018868
Brassica rapa
Bra018868
N
0.721
Bra014282
Brassica rapa
Bra014282
N
0.721
Bo3g179890
Brassica oleracea
Bo3g179890
N
0.714
Bra018894
Brassica rapa
Bra018894
N
0.707
cassava8667.m1
Manihot esculenta
cassava8667.m1
N
0.707