Cucsa.147340 (Cucumis sativus)
AP2,B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2)
PF02362 (B3)
IPR001471
IPR003340
Cucsa.147340 T010563_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
RAV1
M06692_2.00
Arabidopsis thaliana
NCAACADAWWHHWHHHKDDNN

NNHHMDDDWDDWWTHTGTTGN
Dap-seq
OMalley et al.(2016)
RAV1_colamp_a
0.777 0.777
RAV1
M06693_2.00
Arabidopsis thaliana
VCAACADAWWHHAYNHB

VDNRTDDWWTHTGTTGB
Dap-seq
OMalley et al.(2016)
RAV1_col
0.777 0.777
RAV1
M02649_2.00
Arabidopsis thaliana
VNSCAACAKWDN

NHWMTGTTGSNB
SELEX
Mathelier et al.(2014)
MA0582.1
0.777 0.777
RAV1
M02650_2.00
Arabidopsis thaliana
NHCWCCTGRNNH

DNNYCAGGWGDN
SELEX
Mathelier et al.(2014)
MA0583.1
0.777 0.777
RAV1
M09748_2.00
Arabidopsis thaliana
VNSCAACAKWDN

NHWMTGTTGSNB
Transfac
Matys et al.(2006)
P$RAV1_01
0.777 0.777
RAV1
M09749_2.00
Arabidopsis thaliana
NHCWCCTGRNNH

DNNYCAGGWGDN
Transfac
Matys et al.(2006)
P$RAV1_02
0.777 0.777
ARF14
M01648_2.00
Arabidopsis thaliana
RCAACAKA

TMTGTTGY
PBM
Weirauch et al.(2014)
pTH8727
0.764 0.764
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cucsa.147340.1 AP2 43 92
Cucsa.147340.1 B3 168 270

Links

Other AP2,B3 family TFs
Other Cucumis sativus TFs

163 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Cla000872 Citrullus lanatus Cla000872 I 0.953
Aquca_026_00225 Aquilegia coerulea Aquca_026_00225 I 0.858
VIT_01s0011g03070 Vitis vinifera VIT_01s0011g03070 I 0.853
Aquca_002_01106 Aquilegia coerulea Aquca_002_01106 I 0.838
Cla020675 Citrullus lanatus Cla020675 I 0.838
Cucsa.283870 Cucumis sativus Cucsa.283870 I 0.838
mgf019592m Mimulus guttatus mgf019592m I 0.831
Ca_08436 Cicer arietinum Ca_08436 I 0.824
GLYMA10G34760 Glycine max GLYMA10G34760 I 0.824
Gorai.013G080000 Gossypium raimondii Gorai.013G080000 I 0.824
MTR_1g093600 Medicago truncatula MTR_1g093600 I 0.820
POPTR_0008s11600 Populus trichocarpa POPTR_0008s11600 I 0.818
Thhalv10007983m.g Eutrema salsugineum Thhalv10007983m.g I 0.818
SapurV1A.1001s0020 Salix purpurea SapurV1A.1001s0020 I 0.818
MDP0000128924 Malus domestica MDP0000128924 I 0.818
cassava12324.valid.m1 Manihot esculenta cassava12324.valid.m1 I 0.818
Pm029015 Prunus mume Pm029015 I 0.818
SapurV1A.3302s0010 Salix purpurea SapurV1A.3302s0010 I 0.818
PRUPE_ppa006243mg Prunus persica PRUPE_ppa006243mg I 0.818
Bra011002 Brassica rapa Bra011002 I 0.818
29738.m001050 Ricinus communis 29738.m001050 I 0.813
Carubv10020536m.g Capsella rubella Carubv10020536m.g I 0.811
GLYMA20G32730 Glycine max GLYMA20G32730 I 0.811
Thhalv10019566m.g Eutrema salsugineum Thhalv10019566m.g I 0.811
cassava43329.valid.m1 Manihot esculenta cassava43329.valid.m1 I 0.811
Solyc05g009790.1 Solanum lycopersicum Solyc05g009790.1 I 0.811
Cagra.1157s0007 Capsella grandiflora Cagra.1157s0007 I 0.811
GLYMA02G11060 Glycine max GLYMA02G11060 I 0.811
Bostr.12659s0398 Boechera stricta Bostr.12659s0398 I 0.811
Ca_24123 Cicer arietinum Ca_24123 I 0.811
PGSC0003DMG400000811 Solanum tuberosum PGSC0003DMG400000811 I 0.804
Bostr.10273s0485 Boechera stricta Bostr.10273s0485 I 0.804
MTR_5g053920 Medicago truncatula MTR_5g053920 I 0.804
gene03871-v1.0-hybrid Fragaria vesca gene03871-v1.0-hybrid I 0.804
RAV2 Arabidopsis lyrata fgenesh2_kg.2__1141__AT1G68840.1 I 0.804
Bra024735 Brassica rapa Bra024735 I 0.804
Gorai.008G185900 Gossypium raimondii Gorai.008G185900 I 0.804
Bo5g043120 Brassica oleracea Bo5g043120 I 0.804
RAV2 Arabidopsis thaliana AT1G68840 D 0.804
TCM_011862 Theobroma cacao TCM_011862 I 0.804
GSMUA_Achr5G09950_001 Musa acuminata GSMUA_Achr5G09950_001 I 0.800
SapurV1A.0079s0450 Salix purpurea SapurV1A.0079s0450 I 0.800
POPTR_0010s13930 Populus trichocarpa POPTR_0010s13930 I 0.799
Bo3g138550 Brassica oleracea Bo3g138550 I 0.797
orange1.1g017035m.g Citrus sinensis orange1.1g017035m.g I 0.797
Lus10041487.g Linum usitatissimum Lus10041487.g I 0.797
Ciclev10031846m.g Citrus clementina Ciclev10031846m.g I 0.797
TEM1 Arabidopsis lyrata scaffold_102941.1 I 0.793
MDP0000939633 Malus domestica MDP0000939633 I 0.793
AMTR_s00007p00238950 Amborella trichopoda AMTR_s00007p00238950 I 0.791
PK15652.1 Cannabis sativa PK15652.1 I 0.787
Carubv10019207m.g Capsella rubella Carubv10019207m.g I 0.784
RAV1 Arabidopsis lyrata scaffold_101479.1 I 0.784
Cagra.3501s0173 Capsella grandiflora Cagra.3501s0173 I 0.784
Carubv10009612m.g Capsella rubella Carubv10009612m.g I 0.784
Gorai.005G138100 Gossypium raimondii Gorai.005G138100 I 0.784
Thhalv10010019m.g Eutrema salsugineum Thhalv10010019m.g I 0.784
GSMUA_Achr4G06710_001 Musa acuminata GSMUA_Achr4G06710_001 I 0.777
Thhalv10004508m.g Eutrema salsugineum Thhalv10004508m.g I 0.777
Bra026917 Brassica rapa Bra026917 I 0.777
GLYMA01G22260 Glycine max GLYMA01G22260 I 0.777
Bostr.13671s0120 Boechera stricta Bostr.13671s0120 I 0.777
GSMUA_Achr3G21100_001 Musa acuminata GSMUA_Achr3G21100_001 I 0.770
Bostr.0556s0243 Boechera stricta Bostr.0556s0243 I 0.770
PGSC0003DMG400007458 Solanum tuberosum PGSC0003DMG400007458 I 0.770
Bra038346 Brassica rapa Bra038346 I 0.770
Bo5g015210 Brassica oleracea Bo5g015210 I 0.770
Bra019821 Brassica rapa Bra019821 I 0.770
OPUNC01G27280 Oryza punctata OPUNC01G27280 I 0.767
OS01G0693400 Oryza sativa OS01G0693400 I 0.767
RAV1 Arabidopsis thaliana AT1G13260 D 0.767
OBART01G27360 Oryza barthii OBART01G27360 I 0.767
ORUFI01G30390 Oryza rufipogon ORUFI01G30390 I 0.767
ORGLA01G0225300 Oryza glaberrima ORGLA01G0225300 I 0.767
ONIVA01G31290 Oryza nivara ONIVA01G31290 I 0.767
OMERI01G25110 Oryza meridionalis OMERI01G25110 I 0.767
EDF3 Arabidopsis lyrata fgenesh2_kg.5__327__AT3G25730.1 I 0.765
Lus10021707.g Linum usitatissimum Lus10021707.g I 0.765
GRMZM2G169654 Zea mays GRMZM2G169654 I 0.764
Si004045m.g Setaria italica Si004045m.g I 0.764
ARF14 Arabidopsis thaliana AT3G25730 D 0.764
Pavir.Ea02092 Panicum virgatum Pavir.Ea02092 I 0.764
Eucgr.B03048 Eucalyptus grandis Eucgr.B03048 I 0.760
Pavir.J23476 Panicum virgatum Pavir.J23476 I 0.757
BRADI2G47220 Brachypodium distachyon BRADI2G47220 I 0.757
OGLUM01G31260 Oryza glumaepatula OGLUM01G31260 I 0.757
Bo2g061320 Brassica oleracea Bo2g061320 I 0.753
GSMUA_Achr2G22560_001 Musa acuminata GSMUA_Achr2G22560_001 I 0.750
OMERI05G22110 Oryza meridionalis OMERI05G22110 I 0.750
ONIVA05G26000 Oryza nivara ONIVA05G26000 I 0.750
OPUNC05G22370 Oryza punctata OPUNC05G22370 I 0.750
LPERR01G23470 Leersia perrieri LPERR01G23470 I 0.750
Pavir.Eb00702 Panicum virgatum Pavir.Eb00702 I 0.750
Pavir.Eb02845 Panicum virgatum Pavir.Eb02845 I 0.750
GSMUA_Achr6G01420_001 Musa acuminata GSMUA_Achr6G01420_001 I 0.750
Sb03g031860 Sorghum bicolor Sb03g031860 I 0.750
Sb03g006590 Sorghum bicolor Sb03g006590 I 0.750
BGIOSGA020315 Oryza indica BGIOSGA020315 I 0.750
OGLUM05G26380 Oryza glumaepatula OGLUM05G26380 I 0.750
Pavir.Ca01826 Panicum virgatum Pavir.Ca01826 I 0.747
MLOC_5512 Hordeum vulgare MLOC_5512 I 0.745
Pm015500 Prunus mume Pm015500 I 0.743
Pavir.Ea00549 Panicum virgatum Pavir.Ea00549 I 0.743
TRIUR3_27886 Triticum urartu TRIUR3_27886 I 0.743
Si001909m.g Setaria italica Si001909m.g I 0.743
LPERR05G20600 Leersia perrieri LPERR05G20600 I 0.743
OB01G12600 Oryza brachyantha OB01G12600 I 0.743
MLOC_63261 Hordeum vulgare MLOC_63261 I 0.743
BRADI2G02710 Brachypodium distachyon BRADI2G02710 I 0.743
TRAES3BF062600010CFD_g Triticum aestivum TRAES3BF062600010CFD_g I 0.743
GRMZM2G059939 Zea mays GRMZM2G059939 I 0.743
TRAES3BF062700040CFD_g Triticum aestivum TRAES3BF062700040CFD_g I 0.742
OPUNC01G02240 Oryza punctata OPUNC01G02240 I 0.740
Bo2g138650 Brassica oleracea Bo2g138650 I 0.740
VIT_14s0083g00130 Vitis vinifera VIT_14s0083g00130 I 0.740
Sb09g027530 Sorghum bicolor Sb09g027530 I 0.738
OS05G0549800 Oryza sativa OS05G0549800 I 0.736
Bra026509 Brassica rapa Bra026509 I 0.736
MLOC_7940 Hordeum vulgare MLOC_7940 I 0.736
Pavir.J13012 Panicum virgatum Pavir.J13012 I 0.736
BRADI2G17610 Brachypodium distachyon BRADI2G17610 I 0.736
BRADI2G02720 Brachypodium distachyon BRADI2G02720 I 0.736
Si024576m.g Setaria italica Si024576m.g I 0.736
GSMUA_Achr1G05400_001 Musa acuminata GSMUA_Achr1G05400_001 I 0.736
Solyc04g007000.1 Solanum lycopersicum Solyc04g007000.1 I 0.736
Traes_3B_90BE2090B Triticum aestivum Traes_3B_90BE2090B I 0.736
MDP0000945267 Malus domestica MDP0000945267 I 0.733
Eucgr.D00053 Eucalyptus grandis Eucgr.D00053 I 0.730
TCM_019508 Theobroma cacao TCM_019508 I 0.730
Traes_3B_DF7E92499 Triticum aestivum Traes_3B_DF7E92499 I 0.730
Traes_3B_DF7E924991 Triticum aestivum Traes_3B_DF7E924991 I 0.730
TRAES3BF098200010CFD_g Triticum aestivum TRAES3BF098200010CFD_g I 0.730
TRAES3BF108500010CFD_g Triticum aestivum TRAES3BF108500010CFD_g I 0.730
PRUPE_ppa026046mg Prunus persica PRUPE_ppa026046mg I 0.727
TRIUR3_24851 Triticum urartu TRIUR3_24851 I 0.725
OS01G0140700 Oryza sativa OS01G0140700 I 0.723
OGLUM01G02850 Oryza glumaepatula OGLUM01G02850 I 0.723
SELMODRAFT_110104 Selaginella moellendorffii SELMODRAFT_110104 I 0.723
SELMODRAFT_133669 Selaginella moellendorffii SELMODRAFT_133669 I 0.723
LPERR01G02360 Leersia perrieri LPERR01G02360 I 0.723
BGIOSGA002747 Oryza indica BGIOSGA002747 I 0.723
BGIOSGA002753 Oryza indica BGIOSGA002753 I 0.723
OBART01G02610 Oryza barthii OBART01G02610 I 0.723
ORUFI01G02660 Oryza rufipogon ORUFI01G02660 I 0.723
ORGLA01G0022600 Oryza glaberrima ORGLA01G0022600 I 0.723
ORGLA01G0022400 Oryza glaberrima ORGLA01G0022400 I 0.723
OMERI01G02480 Oryza meridionalis OMERI01G02480 I 0.723
ORUFI01G02680 Oryza rufipogon ORUFI01G02680 I 0.723
ONIVA01G02990 Oryza nivara ONIVA01G02990 I 0.723
OMERI01G02500 Oryza meridionalis OMERI01G02500 I 0.723
BGIOSGA002748 Oryza indica BGIOSGA002748 I 0.723
ONIVA01G02970 Oryza nivara ONIVA01G02970 I 0.723
OS01G0141000 Oryza sativa OS01G0141000 I 0.723
Pavir.J00384 Panicum virgatum Pavir.J00384 I 0.722
Pavir.Eb00701 Panicum virgatum Pavir.Eb00701 I 0.716
GSMUA_Achr8G18260_001 Musa acuminata GSMUA_Achr8G18260_001 I 0.716
gene10330-v1.0-hybrid Fragaria vesca gene10330-v1.0-hybrid N 0.716
LPERR01G02380 Leersia perrieri LPERR01G02380 I 0.716
MLOC_56567 Hordeum vulgare MLOC_56567 I 0.711
MLOC_75135 Hordeum vulgare MLOC_75135 I 0.709
Eucgr.L01673 Eucalyptus grandis Eucgr.L01673 I 0.707
GRMZM2G159592 Zea mays GRMZM2G159592 I 0.703
TRAES3BF098300010CFD_g Triticum aestivum TRAES3BF098300010CFD_g I 0.700