Ciclev10012300m.g (Citrus clementina)
AP2,B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2)
PF02362 (B3)
IPR001471
IPR003340
Ciclev10012300m.g T010583_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
RAV1
M06692_2.00
Arabidopsis thaliana
NCAACADAWWHHWHHHKDDNN

NNHHMDDDWDDWWTHTGTTGN
Dap-seq
OMalley et al.(2016)
RAV1_colamp_a
0.748 0.748
RAV1
M06693_2.00
Arabidopsis thaliana
VCAACADAWWHHAYNHB

VDNRTDDWWTHTGTTGB
Dap-seq
OMalley et al.(2016)
RAV1_col
0.748 0.748
RAV1
M02649_2.00
Arabidopsis thaliana
VNSCAACAKWDN

NHWMTGTTGSNB
SELEX
Mathelier et al.(2014)
MA0582.1
0.748 0.748
RAV1
M02650_2.00
Arabidopsis thaliana
NHCWCCTGRNNH

DNNYCAGGWGDN
SELEX
Mathelier et al.(2014)
MA0583.1
0.748 0.748
RAV1
M09748_2.00
Arabidopsis thaliana
VNSCAACAKWDN

NHWMTGTTGSNB
Transfac
Matys et al.(2006)
P$RAV1_01
0.748 0.748
RAV1
M09749_2.00
Arabidopsis thaliana
NHCWCCTGRNNH

DNNYCAGGWGDN
Transfac
Matys et al.(2006)
P$RAV1_02
0.748 0.748
ARF14
M01648_2.00
Arabidopsis thaliana
RCAACAKA

TMTGTTGY
PBM
Weirauch et al.(2014)
pTH8727
0.735 0.735
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Ciclev10012300m AP2 31 80
Ciclev10012300m B3 164 265

Links

Other AP2,B3 family TFs
Other Citrus clementina TFs

149 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
orange1.1g021945m.g Citrus sinensis orange1.1g021945m.g I 0.986
TCM_019508 Theobroma cacao TCM_019508 I 0.788
Gorai.008G185900 Gossypium raimondii Gorai.008G185900 I 0.776
gene03871-v1.0-hybrid Fragaria vesca gene03871-v1.0-hybrid I 0.776
GLYMA02G11060 Glycine max GLYMA02G11060 I 0.776
Pm029015 Prunus mume Pm029015 I 0.776
TCM_011862 Theobroma cacao TCM_011862 I 0.776
Solyc05g009790.1 Solanum lycopersicum Solyc05g009790.1 I 0.776
PRUPE_ppa006243mg Prunus persica PRUPE_ppa006243mg I 0.776
orange1.1g017035m.g Citrus sinensis orange1.1g017035m.g I 0.773
Ciclev10031846m.g Citrus clementina Ciclev10031846m.g I 0.773
Ca_24123 Cicer arietinum Ca_24123 I 0.769
PGSC0003DMG400000811 Solanum tuberosum PGSC0003DMG400000811 I 0.769
Carubv10020536m.g Capsella rubella Carubv10020536m.g I 0.769
MDP0000128924 Malus domestica MDP0000128924 I 0.769
SapurV1A.1001s0020 Salix purpurea SapurV1A.1001s0020 I 0.769
SapurV1A.3302s0010 Salix purpurea SapurV1A.3302s0010 I 0.769
Pm015500 Prunus mume Pm015500 I 0.767
PK15652.1 Cannabis sativa PK15652.1 I 0.767
Gorai.005G138100 Gossypium raimondii Gorai.005G138100 I 0.762
mgf019592m Mimulus guttatus mgf019592m I 0.762
Cagra.1157s0007 Capsella grandiflora Cagra.1157s0007 I 0.762
cassava12324.valid.m1 Manihot esculenta cassava12324.valid.m1 I 0.762
POPTR_0008s11600 Populus trichocarpa POPTR_0008s11600 I 0.762
cassava43329.valid.m1 Manihot esculenta cassava43329.valid.m1 I 0.760
MDP0000939633 Malus domestica MDP0000939633 I 0.760
RAV1 Arabidopsis lyrata scaffold_101479.1 I 0.755
OMERI05G22110 Oryza meridionalis OMERI05G22110 I 0.755
OGLUM05G26380 Oryza glumaepatula OGLUM05G26380 I 0.755
Gorai.013G080000 Gossypium raimondii Gorai.013G080000 I 0.755
Lus10041487.g Linum usitatissimum Lus10041487.g I 0.755
GRMZM2G169654 Zea mays GRMZM2G169654 I 0.755
MTR_5g053920 Medicago truncatula MTR_5g053920 I 0.753
MTR_1g093600 Medicago truncatula MTR_1g093600 I 0.753
MDP0000945267 Malus domestica MDP0000945267 I 0.753
Pavir.J13012 Panicum virgatum Pavir.J13012 I 0.753
Pavir.Ca01826 Panicum virgatum Pavir.Ca01826 I 0.753
Sb09g027530 Sorghum bicolor Sb09g027530 I 0.752
POPTR_0010s13930 Populus trichocarpa POPTR_0010s13930 I 0.752
GLYMA10G34760 Glycine max GLYMA10G34760 I 0.752
Solyc04g007000.1 Solanum lycopersicum Solyc04g007000.1 I 0.750
Thhalv10019566m.g Eutrema salsugineum Thhalv10019566m.g I 0.748
Si024576m.g Setaria italica Si024576m.g I 0.748
Bra026917 Brassica rapa Bra026917 I 0.748
Bostr.12659s0398 Boechera stricta Bostr.12659s0398 I 0.748
OPUNC05G22370 Oryza punctata OPUNC05G22370 I 0.748
OS05G0549800 Oryza sativa OS05G0549800 I 0.748
LPERR01G23470 Leersia perrieri LPERR01G23470 I 0.748
ORUFI01G30390 Oryza rufipogon ORUFI01G30390 I 0.747
ORGLA01G0225300 Oryza glaberrima ORGLA01G0225300 I 0.747
OPUNC01G27280 Oryza punctata OPUNC01G27280 I 0.747
Bo5g015210 Brassica oleracea Bo5g015210 I 0.747
OS01G0693400 Oryza sativa OS01G0693400 I 0.747
Thhalv10010019m.g Eutrema salsugineum Thhalv10010019m.g I 0.747
OBART01G27360 Oryza barthii OBART01G27360 I 0.747
PRUPE_ppa026046mg Prunus persica PRUPE_ppa026046mg I 0.747
ONIVA01G31290 Oryza nivara ONIVA01G31290 I 0.747
SapurV1A.0079s0450 Salix purpurea SapurV1A.0079s0450 I 0.747
29738.m001050 Ricinus communis 29738.m001050 I 0.747
OMERI01G25110 Oryza meridionalis OMERI01G25110 I 0.747
Bra019821 Brassica rapa Bra019821 I 0.747
GRMZM2G059939 Zea mays GRMZM2G059939 I 0.745
Bo3g138550 Brassica oleracea Bo3g138550 I 0.742
Aquca_026_00225 Aquilegia coerulea Aquca_026_00225 I 0.742
Aquca_002_01106 Aquilegia coerulea Aquca_002_01106 I 0.742
BGIOSGA020315 Oryza indica BGIOSGA020315 I 0.742
ONIVA05G26000 Oryza nivara ONIVA05G26000 I 0.742
OGLUM01G31260 Oryza glumaepatula OGLUM01G31260 I 0.742
BRADI2G47220 Brachypodium distachyon BRADI2G47220 I 0.742
GLYMA20G32730 Glycine max GLYMA20G32730 I 0.742
Thhalv10007983m.g Eutrema salsugineum Thhalv10007983m.g I 0.742
Eucgr.B03048 Eucalyptus grandis Eucgr.B03048 I 0.740
TEM1 Arabidopsis lyrata scaffold_102941.1 I 0.740
VIT_01s0011g03070 Vitis vinifera VIT_01s0011g03070 I 0.740
GLYMA01G22260 Glycine max GLYMA01G22260 I 0.740
Ca_08436 Cicer arietinum Ca_08436 I 0.740
RAV2 Arabidopsis thaliana AT1G68840 D 0.740
AMTR_s00007p00238950 Amborella trichopoda AMTR_s00007p00238950 I 0.740
RAV2 Arabidopsis lyrata fgenesh2_kg.2__1141__AT1G68840.1 I 0.740
ORGLA01G0022400 Oryza glaberrima ORGLA01G0022400 I 0.735
ARF14 Arabidopsis thaliana AT3G25730 D 0.735
OB01G12600 Oryza brachyantha OB01G12600 I 0.735
OBART01G02610 Oryza barthii OBART01G02610 I 0.735
ORUFI01G02660 Oryza rufipogon ORUFI01G02660 I 0.735
Carubv10019207m.g Capsella rubella Carubv10019207m.g I 0.735
BGIOSGA002747 Oryza indica BGIOSGA002747 I 0.735
OGLUM01G02850 Oryza glumaepatula OGLUM01G02850 I 0.735
OS01G0140700 Oryza sativa OS01G0140700 I 0.735
OMERI01G02480 Oryza meridionalis OMERI01G02480 I 0.735
Bo5g043120 Brassica oleracea Bo5g043120 I 0.735
ONIVA01G02970 Oryza nivara ONIVA01G02970 I 0.735
Bostr.10273s0485 Boechera stricta Bostr.10273s0485 I 0.733
RAV1 Arabidopsis thaliana AT1G13260 D 0.733
Bra038346 Brassica rapa Bra038346 I 0.733
Bo2g061320 Brassica oleracea Bo2g061320 I 0.733
GSMUA_Achr5G09950_001 Musa acuminata GSMUA_Achr5G09950_001 I 0.733
gene10330-v1.0-hybrid Fragaria vesca gene10330-v1.0-hybrid N 0.733
OPUNC01G02240 Oryza punctata OPUNC01G02240 I 0.733
Carubv10009612m.g Capsella rubella Carubv10009612m.g I 0.733
Bostr.13671s0120 Boechera stricta Bostr.13671s0120 I 0.733
Cagra.3501s0173 Capsella grandiflora Cagra.3501s0173 I 0.733
EDF3 Arabidopsis lyrata fgenesh2_kg.5__327__AT3G25730.1 I 0.732
Bra024735 Brassica rapa Bra024735 I 0.732
TRAES3BF062600010CFD_g Triticum aestivum TRAES3BF062600010CFD_g I 0.728
Bra026509 Brassica rapa Bra026509 I 0.728
Pavir.J00384 Panicum virgatum Pavir.J00384 I 0.722
GSMUA_Achr4G06710_001 Musa acuminata GSMUA_Achr4G06710_001 I 0.721
MLOC_63261 Hordeum vulgare MLOC_63261 I 0.721
Pavir.Eb02845 Panicum virgatum Pavir.Eb02845 I 0.721
MDP0000153589 Malus domestica MDP0000153589 N 0.721
Thhalv10004508m.g Eutrema salsugineum Thhalv10004508m.g I 0.721
GSMUA_Achr1G21250_001 Musa acuminata GSMUA_Achr1G21250_001 I 0.721
Sb03g031860 Sorghum bicolor Sb03g031860 I 0.721
Pavir.J23476 Panicum virgatum Pavir.J23476 I 0.721
TRAES3BF062700040CFD_g Triticum aestivum TRAES3BF062700040CFD_g I 0.721
TRIUR3_27886 Triticum urartu TRIUR3_27886 I 0.721
Bra011002 Brassica rapa Bra011002 I 0.720
Bostr.0556s0243 Boechera stricta Bostr.0556s0243 I 0.720
Cucsa.283870 Cucumis sativus Cucsa.283870 I 0.720
Cla020675 Citrullus lanatus Cla020675 I 0.720
Bo2g138650 Brassica oleracea Bo2g138650 I 0.720
Pavir.Eb00702 Panicum virgatum Pavir.Eb00702 I 0.718
Sb03g006590 Sorghum bicolor Sb03g006590 I 0.718
LPERR01G02360 Leersia perrieri LPERR01G02360 I 0.718
Pavir.Ca01165 Panicum virgatum Pavir.Ca01165 I 0.715
LPERR01G02380 Leersia perrieri LPERR01G02380 I 0.714
BGIOSGA002748 Oryza indica BGIOSGA002748 I 0.714
LPERR05G20600 Leersia perrieri LPERR05G20600 I 0.714
Pavir.Ea02092 Panicum virgatum Pavir.Ea02092 I 0.714
OS01G0141000 Oryza sativa OS01G0141000 I 0.714
ORUFI01G02680 Oryza rufipogon ORUFI01G02680 I 0.714
Si001909m.g Setaria italica Si001909m.g I 0.714
ONIVA01G02990 Oryza nivara ONIVA01G02990 I 0.714
BGIOSGA002753 Oryza indica BGIOSGA002753 I 0.714
GRMZM2G159592 Zea mays GRMZM2G159592 I 0.714
OMERI01G02500 Oryza meridionalis OMERI01G02500 I 0.714
GSMUA_Achr2G22560_001 Musa acuminata GSMUA_Achr2G22560_001 I 0.711
GSMUA_Achr3G21100_001 Musa acuminata GSMUA_Achr3G21100_001 I 0.711
Lus10021707.g Linum usitatissimum Lus10021707.g I 0.711
Pavir.Ea00549 Panicum virgatum Pavir.Ea00549 I 0.709
Si004045m.g Setaria italica Si004045m.g I 0.709
VIT_14s0083g00130 Vitis vinifera VIT_14s0083g00130 I 0.707
BRADI2G02710 Brachypodium distachyon BRADI2G02710 I 0.707
MLOC_5512 Hordeum vulgare MLOC_5512 I 0.705
PGSC0003DMG400007458 Solanum tuberosum PGSC0003DMG400007458 I 0.701
GSMUA_Achr8G18260_001 Musa acuminata GSMUA_Achr8G18260_001 I 0.701
BRADI2G02720 Brachypodium distachyon BRADI2G02720 I 0.701
ORGLA01G0022600 Oryza glaberrima ORGLA01G0022600 I 0.700
MDP0000321569 Malus domestica MDP0000321569 N 0.700