Ciclev10031846m.g (Citrus clementina)
AP2,B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2)
PF02362 (B3)
IPR001471
IPR003340
Ciclev10031846m.g T010585_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
RAV1
M06692_2.00
Arabidopsis thaliana
NCAACADAWWHHWHHHKDDNN

NNHHMDDDWDDWWTHTGTTGN
Dap-seq
OMalley et al.(2016)
RAV1_colamp_a
0.853 0.853
RAV1
M06693_2.00
Arabidopsis thaliana
VCAACADAWWHHAYNHB

VDNRTDDWWTHTGTTGB
Dap-seq
OMalley et al.(2016)
RAV1_col
0.853 0.853
RAV1
M02649_2.00
Arabidopsis thaliana
VNSCAACAKWDN

NHWMTGTTGSNB
SELEX
Mathelier et al.(2014)
MA0582.1
0.853 0.853
RAV1
M02650_2.00
Arabidopsis thaliana
NHCWCCTGRNNH

DNNYCAGGWGDN
SELEX
Mathelier et al.(2014)
MA0583.1
0.853 0.853
RAV1
M09748_2.00
Arabidopsis thaliana
VNSCAACAKWDN

NHWMTGTTGSNB
Transfac
Matys et al.(2006)
P$RAV1_01
0.853 0.853
RAV1
M09749_2.00
Arabidopsis thaliana
NHCWCCTGRNNH

DNNYCAGGWGDN
Transfac
Matys et al.(2006)
P$RAV1_02
0.853 0.853
ARF14
M01648_2.00
Arabidopsis thaliana
RCAACAKA

TMTGTTGY
PBM
Weirauch et al.(2014)
pTH8727
0.787 0.787
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Ciclev10031846m AP2 69 118
Ciclev10031846m B3 207 310

Links

Other AP2,B3 family TFs
Other Citrus clementina TFs

172 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
RAV2 Arabidopsis thaliana AT1G68840 D 0.873
RAV1 Arabidopsis thaliana AT1G13260 D 0.853
ARF14 Arabidopsis thaliana AT3G25730 D 0.787
Pm015500 Prunus mume Pm015500 I 0.753
Cla020675 Citrullus lanatus Cla020675 I 0.887
Cla000872 Citrullus lanatus Cla000872 I 0.792
Ca_24123 Cicer arietinum Ca_24123 I 0.873
Ca_08436 Cicer arietinum Ca_08436 I 0.867
VIT_14s0083g00130 Vitis vinifera VIT_14s0083g00130 I 0.807
VIT_01s0011g03070 Vitis vinifera VIT_01s0011g03070 I 0.900
TRIUR3_27886 Triticum urartu TRIUR3_27886 I 0.780
Pm029015 Prunus mume Pm029015 I 0.907
29738.m001050 Ricinus communis 29738.m001050 I 0.893
cassava12324.valid.m1 Manihot esculenta cassava12324.valid.m1 I 0.893
Aquca_026_00225 Aquilegia coerulea Aquca_026_00225 I 0.860
Aquca_002_01106 Aquilegia coerulea Aquca_002_01106 I 0.853
mgf019592m Mimulus guttatus mgf019592m I 0.907
gw1.135.126.1 Physcomitrella patens gw1.135.126.1 I 0.733
e_gw1.63.77.1 Physcomitrella patens e_gw1.63.77.1 I 0.753
Cucsa.283870 Cucumis sativus Cucsa.283870 I 0.887
Cucsa.147340 Cucumis sativus Cucsa.147340 I 0.797
cassava43329.valid.m1 Manihot esculenta cassava43329.valid.m1 I 0.907
TRIUR3_24851 Triticum urartu TRIUR3_24851 I 0.732
TRAES3BF108500010CFD_g Triticum aestivum TRAES3BF108500010CFD_g I 0.733
TRAES3BF098300010CFD_g Triticum aestivum TRAES3BF098300010CFD_g I 0.700
Si024576m.g Setaria italica Si024576m.g I 0.787
Si004045m.g Setaria italica Si004045m.g I 0.777
Si001909m.g Setaria italica Si001909m.g I 0.747
SELMODRAFT_133669 Selaginella moellendorffii SELMODRAFT_133669 I 0.787
SELMODRAFT_110104 Selaginella moellendorffii SELMODRAFT_110104 I 0.787
TEM1 Arabidopsis lyrata scaffold_102941.1 I 0.873
RAV1 Arabidopsis lyrata scaffold_101479.1 I 0.860
Sb09g027530 Sorghum bicolor Sb09g027530 I 0.819
Solyc04g007000.1 Solanum lycopersicum Solyc04g007000.1 I 0.793
Solyc05g009790.1 Solanum lycopersicum Solyc05g009790.1 I 0.900
TRAES3BF098200010CFD_g Triticum aestivum TRAES3BF098200010CFD_g I 0.733
TRAES3BF062700040CFD_g Triticum aestivum TRAES3BF062700040CFD_g I 0.762
TRAES3BF062600010CFD_g Triticum aestivum TRAES3BF062600010CFD_g I 0.753
Traes_3B_DF7E92499 Triticum aestivum Traes_3B_DF7E92499 I 0.733
Traes_3B_DF7E924991 Triticum aestivum Traes_3B_DF7E924991 I 0.733
Traes_3B_90BE2090B Triticum aestivum Traes_3B_90BE2090B I 0.733
TCM_019508 Theobroma cacao TCM_019508 I 0.767
TCM_011862 Theobroma cacao TCM_011862 I 0.907
Sb03g031860 Sorghum bicolor Sb03g031860 I 0.760
Bostr.0556s0243 Boechera stricta Bostr.0556s0243 I 0.787
PK15652.1 Cannabis sativa PK15652.1 I 0.900
Pavir.Eb02845 Panicum virgatum Pavir.Eb02845 I 0.773
Pavir.Eb00702 Panicum virgatum Pavir.Eb00702 I 0.767
Pavir.Eb00701 Panicum virgatum Pavir.Eb00701 I 0.720
Pavir.Ea02092 Panicum virgatum Pavir.Ea02092 I 0.773
Pavir.Ea00549 Panicum virgatum Pavir.Ea00549 I 0.770
Pavir.Ca01826 Panicum virgatum Pavir.Ca01826 I 0.808
Pavir.Ca01165 Panicum virgatum Pavir.Ca01165 I 0.731
orange1.1g021945m.g Citrus sinensis orange1.1g021945m.g I 0.780
Pavir.J00384 Panicum virgatum Pavir.J00384 I 0.762
Pavir.J13012 Panicum virgatum Pavir.J13012 I 0.787
Thhalv10019566m.g Eutrema salsugineum Thhalv10019566m.g I 0.873
Thhalv10010019m.g Eutrema salsugineum Thhalv10010019m.g I 0.867
Thhalv10007983m.g Eutrema salsugineum Thhalv10007983m.g I 0.847
Thhalv10004508m.g Eutrema salsugineum Thhalv10004508m.g I 0.820
SapurV1A.3302s0010 Salix purpurea SapurV1A.3302s0010 I 0.893
SapurV1A.1001s0020 Salix purpurea SapurV1A.1001s0020 I 0.893
SapurV1A.0079s0450 Salix purpurea SapurV1A.0079s0450 I 0.880
Pavir.J23476 Panicum virgatum Pavir.J23476 I 0.760
orange1.1g017035m.g Citrus sinensis orange1.1g017035m.g I 1.000
MDP0000945267 Malus domestica MDP0000945267 I 0.733
MDP0000939633 Malus domestica MDP0000939633 I 0.893
Ciclev10012300m.g Citrus clementina Ciclev10012300m.g I 0.773
Carubv10020536m.g Capsella rubella Carubv10020536m.g I 0.887
Carubv10019207m.g Capsella rubella Carubv10019207m.g I 0.807
Carubv10009612m.g Capsella rubella Carubv10009612m.g I 0.853
Cagra.3501s0173 Capsella grandiflora Cagra.3501s0173 I 0.853
Cagra.1157s0007 Capsella grandiflora Cagra.1157s0007 I 0.873
Bostr.13671s0120 Boechera stricta Bostr.13671s0120 I 0.847
Bostr.12659s0398 Boechera stricta Bostr.12659s0398 I 0.860
Eucgr.B03048 Eucalyptus grandis Eucgr.B03048 I 0.840
Eucgr.D00053 Eucalyptus grandis Eucgr.D00053 I 0.747
MDP0000128924 Malus domestica MDP0000128924 I 0.893
Lus10041487.g Linum usitatissimum Lus10041487.g I 0.847
Lus10021707.g Linum usitatissimum Lus10021707.g I 0.779
Gorai.013G080000 Gossypium raimondii Gorai.013G080000 I 0.880
Gorai.008G185900 Gossypium raimondii Gorai.008G185900 I 0.907
Gorai.005G138100 Gossypium raimondii Gorai.005G138100 I 0.873
gene03871-v1.0-hybrid Fragaria vesca gene03871-v1.0-hybrid I 0.947
Eucgr.L01673 Eucalyptus grandis Eucgr.L01673 I 0.733
Bostr.10273s0485 Boechera stricta Bostr.10273s0485 I 0.867
LPERR01G23470 Leersia perrieri LPERR01G23470 I 0.789
GRMZM2G169654 Zea mays GRMZM2G169654 I 0.793
GRMZM2G159592 Zea mays GRMZM2G159592 I 0.780
GRMZM2G059939 Zea mays GRMZM2G059939 I 0.807
GLYMA20G32730 Glycine max GLYMA20G32730 I 0.867
GLYMA10G34760 Glycine max GLYMA10G34760 I 0.873
GLYMA02G11060 Glycine max GLYMA02G11060 I 0.893
GLYMA01G22260 Glycine max GLYMA01G22260 I 0.867
EDF3 Arabidopsis lyrata fgenesh2_kg.5__327__AT3G25730.1 I 0.805
GSMUA_Achr1G05400_001 Musa acuminata GSMUA_Achr1G05400_001 I 0.760
GSMUA_Achr1G21250_001 Musa acuminata GSMUA_Achr1G21250_001 I 0.733
LPERR01G02380 Leersia perrieri LPERR01G02380 I 0.767
LPERR01G02360 Leersia perrieri LPERR01G02360 I 0.765
GSMUA_Achr8G18260_001 Musa acuminata GSMUA_Achr8G18260_001 I 0.747
GSMUA_Achr6G01420_001 Musa acuminata GSMUA_Achr6G01420_001 I 0.767
GSMUA_Achr5G09950_001 Musa acuminata GSMUA_Achr5G09950_001 I 0.840
GSMUA_Achr4G06710_001 Musa acuminata GSMUA_Achr4G06710_001 I 0.793
GSMUA_Achr3G21100_001 Musa acuminata GSMUA_Achr3G21100_001 I 0.773
GSMUA_Achr2G22560_001 Musa acuminata GSMUA_Achr2G22560_001 I 0.767
RAV2 Arabidopsis lyrata fgenesh2_kg.2__1141__AT1G68840.1 I 0.887
BRADI2G47220 Brachypodium distachyon BRADI2G47220 I 0.803
BRADI2G17610 Brachypodium distachyon BRADI2G17610 I 0.747
Bo5g015210 Brassica oleracea Bo5g015210 I 0.860
Bo3g138550 Brassica oleracea Bo3g138550 I 0.853
Bo2g138650 Brassica oleracea Bo2g138650 I 0.800
Bo2g061320 Brassica oleracea Bo2g061320 I 0.847
BGIOSGA020315 Oryza indica BGIOSGA020315 I 0.793
BGIOSGA002753 Oryza indica BGIOSGA002753 I 0.747
BGIOSGA002748 Oryza indica BGIOSGA002748 I 0.747
BGIOSGA002747 Oryza indica BGIOSGA002747 I 0.740
Bo5g043120 Brassica oleracea Bo5g043120 I 0.853
Bra011002 Brassica rapa Bra011002 I 0.840
BRADI2G02720 Brachypodium distachyon BRADI2G02720 I 0.740
BRADI2G02710 Brachypodium distachyon BRADI2G02710 I 0.740
Bra038346 Brassica rapa Bra038346 I 0.853
Bra026917 Brassica rapa Bra026917 I 0.847
Bra026509 Brassica rapa Bra026509 I 0.787
Bra025159 Brassica rapa Bra025159 I 0.750
Bra024735 Brassica rapa Bra024735 I 0.866
Bra019821 Brassica rapa Bra019821 I 0.860
AMTR_s00007p00238950 Amborella trichopoda AMTR_s00007p00238950 I 0.827
LPERR05G20600 Leersia perrieri LPERR05G20600 I 0.767
Sb03g006590 Sorghum bicolor Sb03g006590 I 0.760
ORUFI01G02680 Oryza rufipogon ORUFI01G02680 I 0.747
ORUFI01G02660 Oryza rufipogon ORUFI01G02660 I 0.740
ORGLA01G0225300 Oryza glaberrima ORGLA01G0225300 I 0.795
ORGLA01G0022600 Oryza glaberrima ORGLA01G0022600 I 0.753
ORGLA01G0022400 Oryza glaberrima ORGLA01G0022400 I 0.740
OPUNC05G22370 Oryza punctata OPUNC05G22370 I 0.800
OPUNC01G27280 Oryza punctata OPUNC01G27280 I 0.795
OPUNC01G02240 Oryza punctata OPUNC01G02240 I 0.760
ONIVA05G26000 Oryza nivara ONIVA05G26000 I 0.793
ORUFI01G30390 Oryza rufipogon ORUFI01G30390 I 0.795
OS01G0140700 Oryza sativa OS01G0140700 I 0.740
PRUPE_ppa026046mg Prunus persica PRUPE_ppa026046mg I 0.747
PRUPE_ppa006243mg Prunus persica PRUPE_ppa006243mg I 0.907
POPTR_0010s13930 Populus trichocarpa POPTR_0010s13930 I 0.913
POPTR_0008s11600 Populus trichocarpa POPTR_0008s11600 I 0.880
PGSC0003DMG400007458 Solanum tuberosum PGSC0003DMG400007458 I 0.780
PGSC0003DMG400000811 Solanum tuberosum PGSC0003DMG400000811 I 0.900
OS05G0549800 Oryza sativa OS05G0549800 I 0.800
OS01G0693400 Oryza sativa OS01G0693400 I 0.795
OS01G0141000 Oryza sativa OS01G0141000 I 0.747
ONIVA01G31290 Oryza nivara ONIVA01G31290 I 0.795
MLOC_5512 Hordeum vulgare MLOC_5512 I 0.758
OBART01G27360 Oryza barthii OBART01G27360 I 0.795
OBART01G02610 Oryza barthii OBART01G02610 I 0.740
OB01G12600 Oryza brachyantha OB01G12600 I 0.767
MTR_5g053920 Medicago truncatula MTR_5g053920 I 0.847
MTR_1g093600 Medicago truncatula MTR_1g093600 I 0.880
MLOC_7940 Hordeum vulgare MLOC_7940 I 0.733
MLOC_75135 Hordeum vulgare MLOC_75135 I 0.720
MLOC_63261 Hordeum vulgare MLOC_63261 I 0.773
MLOC_56567 Hordeum vulgare MLOC_56567 I 0.725
OGLUM01G02850 Oryza glumaepatula OGLUM01G02850 I 0.740
OGLUM01G31260 Oryza glumaepatula OGLUM01G31260 I 0.773
ONIVA01G02990 Oryza nivara ONIVA01G02990 I 0.747
ONIVA01G02970 Oryza nivara ONIVA01G02970 I 0.740
OMERI05G22110 Oryza meridionalis OMERI05G22110 I 0.807
OMERI01G25110 Oryza meridionalis OMERI01G25110 I 0.795
OMERI01G02500 Oryza meridionalis OMERI01G02500 I 0.747
OMERI01G02480 Oryza meridionalis OMERI01G02480 I 0.740
OGLUM05G26380 Oryza glumaepatula OGLUM05G26380 I 0.807
gene10330-v1.0-hybrid Fragaria vesca gene10330-v1.0-hybrid N 0.720
MDP0000153589 Malus domestica MDP0000153589 N 0.700
MDP0000321569 Malus domestica MDP0000321569 N 0.707