CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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gene24427-v1.0-hybrid
(
Fragaria vesca
)
AP2,B3
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00847 (AP2)
PF02362 (B3)
IPR001471
IPR003340
gene24427-v1.0-hybrid
T010594_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
mrna24427.1-v1.0-hybrid
AP2
53
102
ARFKGVVPQQNGHWGAQIYANHQRVWLGTFKSENEAAMAYDSAAIKLRKG
mrna24427.1-v1.0-hybrid
B3
180
287
FQKELTPSDVGKLNRLVIPKKYAVKYFPCISETAEENGVDDVELVFYDKVMRAWKFRYCYWKSSQSFVFTRGWNRFVKENNLKANDVITFYACESAELVRDESGEVTT
Links
Other
AP2,B3
family TFs
Other
Fragaria vesca
TFs
27 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Pm028198
Prunus mume
Pm028198
N
0.861
PRUPE_ppa026651mg
Prunus persica
PRUPE_ppa026651mg
N
0.861
orange1.1g018549m.g
Citrus sinensis
orange1.1g018549m.g
N
0.819
Ciclev10010403m.g
Citrus clementina
Ciclev10010403m.g
N
0.812
29650.m000279
Ricinus communis
29650.m000279
N
0.792
Gorai.013G249100
Gossypium raimondii
Gorai.013G249100
N
0.778
Cla019009
Citrullus lanatus
Cla019009
N
0.778
Ciclev10017535m.g
Citrus clementina
Ciclev10017535m.g
N
0.775
orange1.1g046898m.g
Citrus sinensis
orange1.1g046898m.g
N
0.775
evm.TU.contig_32277
Carica papaya
evm.TU.contig_32277
N
0.774
Cucsa.350980
Cucumis sativus
Cucsa.350980
N
0.771
cassava14279.m1
Manihot esculenta
cassava14279.m1
N
0.757
cassava27051.m1
Manihot esculenta
cassava27051.m1
N
0.754
LjSGA_031594.1
Lotus japonicus
LjSGA_031594.1
N
0.750
Eucgr.C00358
Eucalyptus grandis
Eucgr.C00358
N
0.743
Bo3g179890
Brassica oleracea
Bo3g179890
N
0.739
SapurV1A.2134s0020
Salix purpurea
SapurV1A.2134s0020
N
0.736
VIT_11s0037g00010
Vitis vinifera
VIT_11s0037g00010
N
0.736
28008.m000029
Ricinus communis
28008.m000029
N
0.736
Bra014282
Brassica rapa
Bra014282
N
0.732
PK28088.1
Cannabis sativa
PK28088.1
N
0.722
POPTR_0006s20040
Populus trichocarpa
POPTR_0006s20040
N
0.715
POPTR_0003s21810
Populus trichocarpa
POPTR_0003s21810
N
0.715
cassava8667.m1
Manihot esculenta
cassava8667.m1
N
0.708
SapurV1A.0009s0070
Salix purpurea
SapurV1A.0009s0070
N
0.704
Aquca_011_00122
Aquilegia coerulea
Aquca_011_00122
N
0.703
Gorai.009G020300
Gossypium raimondii
Gorai.009G020300
N
0.701