Gorai.008G185900 (Gossypium raimondii)
AP2,B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2)
PF02362 (B3)
IPR001471
IPR003340
Gorai.008G185900 T010597_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
RAV1
M06692_2.00
Arabidopsis thaliana
NCAACADAWWHHWHHHKDDNN

NNHHMDDDWDDWWTHTGTTGN
Dap-seq
OMalley et al.(2016)
RAV1_colamp_a
0.847 0.847
RAV1
M06693_2.00
Arabidopsis thaliana
VCAACADAWWHHAYNHB

VDNRTDDWWTHTGTTGB
Dap-seq
OMalley et al.(2016)
RAV1_col
0.847 0.847
RAV1
M02649_2.00
Arabidopsis thaliana
VNSCAACAKWDN

NHWMTGTTGSNB
SELEX
Mathelier et al.(2014)
MA0582.1
0.847 0.847
RAV1
M02650_2.00
Arabidopsis thaliana
NHCWCCTGRNNH

DNNYCAGGWGDN
SELEX
Mathelier et al.(2014)
MA0583.1
0.847 0.847
RAV1
M09748_2.00
Arabidopsis thaliana
VNSCAACAKWDN

NHWMTGTTGSNB
Transfac
Matys et al.(2006)
P$RAV1_01
0.847 0.847
RAV1
M09749_2.00
Arabidopsis thaliana
NHCWCCTGRNNH

DNNYCAGGWGDN
Transfac
Matys et al.(2006)
P$RAV1_02
0.847 0.847
ARF14
M01648_2.00
Arabidopsis thaliana
RCAACAKA

TMTGTTGY
PBM
Weirauch et al.(2014)
pTH8727
0.780 0.780
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.008G185900.1 AP2 64 113
Gorai.008G185900.1 B3 193 297

Links

Other AP2,B3 family TFs
Other Gossypium raimondii TFs

175 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
TCM_011862 Theobroma cacao TCM_011862 I 0.980
Gorai.005G138100 Gossypium raimondii Gorai.005G138100 I 0.933
cassava12324.valid.m1 Manihot esculenta cassava12324.valid.m1 I 0.933
29738.m001050 Ricinus communis 29738.m001050 I 0.927
cassava43329.valid.m1 Manihot esculenta cassava43329.valid.m1 I 0.927
Pm029015 Prunus mume Pm029015 I 0.920
PRUPE_ppa006243mg Prunus persica PRUPE_ppa006243mg I 0.920
MDP0000939633 Malus domestica MDP0000939633 I 0.907
orange1.1g017035m.g Citrus sinensis orange1.1g017035m.g I 0.907
Ciclev10031846m.g Citrus clementina Ciclev10031846m.g I 0.907
MDP0000128924 Malus domestica MDP0000128924 I 0.907
POPTR_0010s13930 Populus trichocarpa POPTR_0010s13930 I 0.906
SapurV1A.0079s0450 Salix purpurea SapurV1A.0079s0450 I 0.900
gene03871-v1.0-hybrid Fragaria vesca gene03871-v1.0-hybrid I 0.900
Gorai.013G080000 Gossypium raimondii Gorai.013G080000 I 0.900
POPTR_0008s11600 Populus trichocarpa POPTR_0008s11600 I 0.893
PK15652.1 Cannabis sativa PK15652.1 I 0.893
SapurV1A.1001s0020 Salix purpurea SapurV1A.1001s0020 I 0.887
SapurV1A.3302s0010 Salix purpurea SapurV1A.3302s0010 I 0.887
VIT_01s0011g03070 Vitis vinifera VIT_01s0011g03070 I 0.887
GLYMA02G11060 Glycine max GLYMA02G11060 I 0.880
MTR_5g053920 Medicago truncatula MTR_5g053920 I 0.873
PGSC0003DMG400000811 Solanum tuberosum PGSC0003DMG400000811 I 0.873
Solyc05g009790.1 Solanum lycopersicum Solyc05g009790.1 I 0.873
Ca_24123 Cicer arietinum Ca_24123 I 0.873
Cucsa.283870 Cucumis sativus Cucsa.283870 I 0.867
Cla020675 Citrullus lanatus Cla020675 I 0.867
RAV2 Arabidopsis lyrata fgenesh2_kg.2__1141__AT1G68840.1 I 0.860
Carubv10009612m.g Capsella rubella Carubv10009612m.g I 0.860
Cagra.3501s0173 Capsella grandiflora Cagra.3501s0173 I 0.860
Aquca_002_01106 Aquilegia coerulea Aquca_002_01106 I 0.860
Carubv10020536m.g Capsella rubella Carubv10020536m.g I 0.860
Thhalv10010019m.g Eutrema salsugineum Thhalv10010019m.g I 0.860
GSMUA_Achr5G09950_001 Musa acuminata GSMUA_Achr5G09950_001 I 0.860
RAV2 Arabidopsis thaliana AT1G68840 D 0.860
Bostr.10273s0485 Boechera stricta Bostr.10273s0485 I 0.853
Bo5g015210 Brassica oleracea Bo5g015210 I 0.853
RAV1 Arabidopsis lyrata scaffold_101479.1 I 0.853
Eucgr.B03048 Eucalyptus grandis Eucgr.B03048 I 0.853
MTR_1g093600 Medicago truncatula MTR_1g093600 I 0.853
Bra019821 Brassica rapa Bra019821 I 0.853
Aquca_026_00225 Aquilegia coerulea Aquca_026_00225 I 0.853
GLYMA01G22260 Glycine max GLYMA01G22260 I 0.853
Cagra.1157s0007 Capsella grandiflora Cagra.1157s0007 I 0.853
Bra026917 Brassica rapa Bra026917 I 0.853
GLYMA10G34760 Glycine max GLYMA10G34760 I 0.852
Lus10041487.g Linum usitatissimum Lus10041487.g I 0.847
Thhalv10019566m.g Eutrema salsugineum Thhalv10019566m.g I 0.847
RAV1 Arabidopsis thaliana AT1G13260 D 0.847
GLYMA20G32730 Glycine max GLYMA20G32730 I 0.847
Bostr.13671s0120 Boechera stricta Bostr.13671s0120 I 0.847
Ca_08436 Cicer arietinum Ca_08436 I 0.840
mgf019592m Mimulus guttatus mgf019592m I 0.840
TEM1 Arabidopsis lyrata scaffold_102941.1 I 0.833
Bostr.12659s0398 Boechera stricta Bostr.12659s0398 I 0.833
Solyc04g007000.1 Solanum lycopersicum Solyc04g007000.1 I 0.833
Bra024735 Brassica rapa Bra024735 I 0.832
Bo3g138550 Brassica oleracea Bo3g138550 I 0.827
Bra038346 Brassica rapa Bra038346 I 0.827
Bo5g043120 Brassica oleracea Bo5g043120 I 0.826
Thhalv10007983m.g Eutrema salsugineum Thhalv10007983m.g I 0.820
AMTR_s00007p00238950 Amborella trichopoda AMTR_s00007p00238950 I 0.820
GSMUA_Achr4G06710_001 Musa acuminata GSMUA_Achr4G06710_001 I 0.816
Thhalv10004508m.g Eutrema salsugineum Thhalv10004508m.g I 0.813
Bra011002 Brassica rapa Bra011002 I 0.813
Pavir.J13012 Panicum virgatum Pavir.J13012 I 0.808
Si024576m.g Setaria italica Si024576m.g I 0.808
Pavir.Ca01826 Panicum virgatum Pavir.Ca01826 I 0.808
Bo2g061320 Brassica oleracea Bo2g061320 I 0.807
Cla000872 Citrullus lanatus Cla000872 I 0.805
Sb09g027530 Sorghum bicolor Sb09g027530 I 0.805
Cucsa.147340 Cucumis sativus Cucsa.147340 I 0.804
SELMODRAFT_110104 Selaginella moellendorffii SELMODRAFT_110104 I 0.803
SELMODRAFT_133669 Selaginella moellendorffii SELMODRAFT_133669 I 0.803
OPUNC05G22370 Oryza punctata OPUNC05G22370 I 0.800
EDF3 Arabidopsis lyrata fgenesh2_kg.5__327__AT3G25730.1 I 0.799
GRMZM2G059939 Zea mays GRMZM2G059939 I 0.799
GSMUA_Achr3G21100_001 Musa acuminata GSMUA_Achr3G21100_001 I 0.799
OS05G0549800 Oryza sativa OS05G0549800 I 0.793
PGSC0003DMG400007458 Solanum tuberosum PGSC0003DMG400007458 I 0.793
VIT_14s0083g00130 Vitis vinifera VIT_14s0083g00130 I 0.793
OGLUM05G26380 Oryza glumaepatula OGLUM05G26380 I 0.793
OMERI05G22110 Oryza meridionalis OMERI05G22110 I 0.793
Carubv10019207m.g Capsella rubella Carubv10019207m.g I 0.793
Lus10021707.g Linum usitatissimum Lus10021707.g I 0.792
GSMUA_Achr2G22560_001 Musa acuminata GSMUA_Achr2G22560_001 I 0.792
ONIVA05G26000 Oryza nivara ONIVA05G26000 I 0.792
BGIOSGA020315 Oryza indica BGIOSGA020315 I 0.792
OMERI01G25110 Oryza meridionalis OMERI01G25110 I 0.788
OS01G0693400 Oryza sativa OS01G0693400 I 0.788
OBART01G27360 Oryza barthii OBART01G27360 I 0.788
TCM_019508 Theobroma cacao TCM_019508 I 0.788
ORUFI01G30390 Oryza rufipogon ORUFI01G30390 I 0.788
ONIVA01G31290 Oryza nivara ONIVA01G31290 I 0.788
OPUNC01G27280 Oryza punctata OPUNC01G27280 I 0.788
ORGLA01G0225300 Oryza glaberrima ORGLA01G0225300 I 0.788
Bo2g138650 Brassica oleracea Bo2g138650 I 0.787
BRADI2G47220 Brachypodium distachyon BRADI2G47220 I 0.782
LPERR01G23470 Leersia perrieri LPERR01G23470 I 0.782
OPUNC01G02240 Oryza punctata OPUNC01G02240 I 0.781
ARF14 Arabidopsis thaliana AT3G25730 D 0.780
Bostr.0556s0243 Boechera stricta Bostr.0556s0243 I 0.780
GRMZM2G169654 Zea mays GRMZM2G169654 I 0.780
LPERR01G02360 Leersia perrieri LPERR01G02360 I 0.779
Ciclev10012300m.g Citrus clementina Ciclev10012300m.g I 0.776
Bra026509 Brassica rapa Bra026509 I 0.773
gw1.135.126.1 Physcomitrella patens gw1.135.126.1 I 0.773
Pavir.Eb00702 Panicum virgatum Pavir.Eb00702 I 0.772
OB01G12600 Oryza brachyantha OB01G12600 I 0.770
Pavir.Ea00549 Panicum virgatum Pavir.Ea00549 I 0.770
TRAES3BF062600010CFD_g Triticum aestivum TRAES3BF062600010CFD_g I 0.769
Pavir.J23476 Panicum virgatum Pavir.J23476 I 0.767
GSMUA_Achr1G05400_001 Musa acuminata GSMUA_Achr1G05400_001 I 0.767
GSMUA_Achr6G01420_001 Musa acuminata GSMUA_Achr6G01420_001 I 0.767
OGLUM01G31260 Oryza glumaepatula OGLUM01G31260 I 0.767
Pm015500 Prunus mume Pm015500 I 0.767
GSMUA_Achr8G18260_001 Musa acuminata GSMUA_Achr8G18260_001 I 0.766
Si004045m.g Setaria italica Si004045m.g I 0.764
TRAES3BF062700040CFD_g Triticum aestivum TRAES3BF062700040CFD_g I 0.762
Pavir.J00384 Panicum virgatum Pavir.J00384 I 0.762
Pavir.Ea02092 Panicum virgatum Pavir.Ea02092 I 0.760
Pavir.Eb02845 Panicum virgatum Pavir.Eb02845 I 0.760
PRUPE_ppa026046mg Prunus persica PRUPE_ppa026046mg I 0.760
LPERR05G20600 Leersia perrieri LPERR05G20600 I 0.760
MLOC_5512 Hordeum vulgare MLOC_5512 I 0.758
Sb03g006590 Sorghum bicolor Sb03g006590 I 0.758
Eucgr.D00053 Eucalyptus grandis Eucgr.D00053 I 0.753
ONIVA01G02970 Oryza nivara ONIVA01G02970 I 0.753
OMERI01G02480 Oryza meridionalis OMERI01G02480 I 0.753
ORGLA01G0022400 Oryza glaberrima ORGLA01G0022400 I 0.753
OBART01G02610 Oryza barthii OBART01G02610 I 0.753
BGIOSGA002747 Oryza indica BGIOSGA002747 I 0.753
GRMZM2G159592 Zea mays GRMZM2G159592 I 0.753
orange1.1g021945m.g Citrus sinensis orange1.1g021945m.g I 0.753
ORUFI01G02660 Oryza rufipogon ORUFI01G02660 I 0.753
TRIUR3_27886 Triticum urartu TRIUR3_27886 I 0.753
OGLUM01G02850 Oryza glumaepatula OGLUM01G02850 I 0.753
OS01G0140700 Oryza sativa OS01G0140700 I 0.753
Traes_3B_90BE2090B Triticum aestivum Traes_3B_90BE2090B I 0.752
MLOC_7940 Hordeum vulgare MLOC_7940 I 0.752
TRAES3BF098200010CFD_g Triticum aestivum TRAES3BF098200010CFD_g I 0.747
Traes_3B_DF7E92499 Triticum aestivum Traes_3B_DF7E92499 I 0.747
TRAES3BF108500010CFD_g Triticum aestivum TRAES3BF108500010CFD_g I 0.747
Traes_3B_DF7E924991 Triticum aestivum Traes_3B_DF7E924991 I 0.747
LPERR01G02380 Leersia perrieri LPERR01G02380 I 0.747
e_gw1.63.77.1 Physcomitrella patens e_gw1.63.77.1 I 0.747
Si001909m.g Setaria italica Si001909m.g I 0.747
Sb03g031860 Sorghum bicolor Sb03g031860 I 0.747
MDP0000945267 Malus domestica MDP0000945267 I 0.747
TRIUR3_24851 Triticum urartu TRIUR3_24851 I 0.745
BRADI2G02720 Brachypodium distachyon BRADI2G02720 I 0.740
MLOC_63261 Hordeum vulgare MLOC_63261 I 0.740
Eucgr.L01673 Eucalyptus grandis Eucgr.L01673 I 0.740
MLOC_56567 Hordeum vulgare MLOC_56567 I 0.738
Bra025159 Brassica rapa Bra025159 I 0.735
BGIOSGA002753 Oryza indica BGIOSGA002753 I 0.733
OS01G0141000 Oryza sativa OS01G0141000 I 0.733
ONIVA01G02990 Oryza nivara ONIVA01G02990 I 0.733
BGIOSGA002748 Oryza indica BGIOSGA002748 I 0.733
OMERI01G02500 Oryza meridionalis OMERI01G02500 I 0.733
ORUFI01G02680 Oryza rufipogon ORUFI01G02680 I 0.733
BRADI2G17610 Brachypodium distachyon BRADI2G17610 I 0.727
BGIOSGA000982 Oryza indica BGIOSGA000982 I 0.727
BRADI2G02710 Brachypodium distachyon BRADI2G02710 I 0.727
GSMUA_Achr1G21250_001 Musa acuminata GSMUA_Achr1G21250_001 I 0.727
ORGLA01G0022600 Oryza glaberrima ORGLA01G0022600 I 0.727
MLOC_75135 Hordeum vulgare MLOC_75135 I 0.727
Pavir.Ca01165 Panicum virgatum Pavir.Ca01165 I 0.723
gene10330-v1.0-hybrid Fragaria vesca gene10330-v1.0-hybrid N 0.713
MDP0000321569 Malus domestica MDP0000321569 N 0.713
GSMUA_Achr9G21470_001 Musa acuminata GSMUA_Achr9G21470_001 N 0.712
Pavir.Eb00701 Panicum virgatum Pavir.Eb00701 I 0.705
GSMUA_AchrUn_randomG06880_001 Musa acuminata GSMUA_AchrUn_randomG06880_001 I 0.700
MDP0000153589 Malus domestica MDP0000153589 N 0.700
TRAES3BF098300010CFD_g Triticum aestivum TRAES3BF098300010CFD_g I 0.700