MDP0000945267 (Malus domestica)
AP2,B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2)
PF02362 (B3)
IPR001471
IPR003340
MDP0000945267 T010620_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ARF14
M01648_2.00
Arabidopsis thaliana
RCAACAKA

TMTGTTGY
PBM
Weirauch et al.(2014)
pTH8727
0.707 0.707
RAV1
M06692_2.00
Arabidopsis thaliana
NCAACADAWWHHWHHHKDDNN

NNHHMDDDWDDWWTHTGTTGN
Dap-seq
OMalley et al.(2016)
RAV1_colamp_a
0.707 0.707
RAV1
M06693_2.00
Arabidopsis thaliana
VCAACADAWWHHAYNHB

VDNRTDDWWTHTGTTGB
Dap-seq
OMalley et al.(2016)
RAV1_col
0.707 0.707
RAV1
M02649_2.00
Arabidopsis thaliana
VNSCAACAKWDN

NHWMTGTTGSNB
SELEX
Mathelier et al.(2014)
MA0582.1
0.707 0.707
RAV1
M02650_2.00
Arabidopsis thaliana
NHCWCCTGRNNH

DNNYCAGGWGDN
SELEX
Mathelier et al.(2014)
MA0583.1
0.707 0.707
RAV1
M09748_2.00
Arabidopsis thaliana
VNSCAACAKWDN

NHWMTGTTGSNB
Transfac
Matys et al.(2006)
P$RAV1_01
0.707 0.707
RAV1
M09749_2.00
Arabidopsis thaliana
NHCWCCTGRNNH

DNNYCAGGWGDN
Transfac
Matys et al.(2006)
P$RAV1_02
0.707 0.707
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
MDP0000945267 AP2 30 79
MDP0000945267 B3 161 265

Links

Other AP2,B3 family TFs
Other Malus domestica TFs

96 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
PRUPE_ppa026046mg Prunus persica PRUPE_ppa026046mg I 0.867
Pm015500 Prunus mume Pm015500 I 0.853
MDP0000223137 Malus domestica MDP0000223137 N 0.847
MDP0000153589 Malus domestica MDP0000153589 N 0.847
MDP0000321569 Malus domestica MDP0000321569 N 0.847
gene10330-v1.0-hybrid Fragaria vesca gene10330-v1.0-hybrid N 0.833
VIT_01s0011g03070 Vitis vinifera VIT_01s0011g03070 I 0.767
TCM_019508 Theobroma cacao TCM_019508 I 0.760
Solyc05g009790.1 Solanum lycopersicum Solyc05g009790.1 I 0.760
Aquca_002_01106 Aquilegia coerulea Aquca_002_01106 I 0.760
Ciclev10012300m.g Citrus clementina Ciclev10012300m.g I 0.753
PRUPE_ppa006243mg Prunus persica PRUPE_ppa006243mg I 0.747
PGSC0003DMG400000811 Solanum tuberosum PGSC0003DMG400000811 I 0.747
orange1.1g021945m.g Citrus sinensis orange1.1g021945m.g I 0.747
Gorai.008G185900 Gossypium raimondii Gorai.008G185900 I 0.747
MTR_5g053920 Medicago truncatula MTR_5g053920 I 0.747
Pm029015 Prunus mume Pm029015 I 0.747
cassava43329.valid.m1 Manihot esculenta cassava43329.valid.m1 I 0.747
Ca_24123 Cicer arietinum Ca_24123 I 0.747
AMTR_s00007p00238950 Amborella trichopoda AMTR_s00007p00238950 I 0.747
Cagra.1157s0007 Capsella grandiflora Cagra.1157s0007 I 0.740
Aquca_026_00225 Aquilegia coerulea Aquca_026_00225 I 0.740
GLYMA02G11060 Glycine max GLYMA02G11060 I 0.740
29738.m001050 Ricinus communis 29738.m001050 I 0.740
TCM_011862 Theobroma cacao TCM_011862 I 0.740
Gorai.013G080000 Gossypium raimondii Gorai.013G080000 I 0.740
SapurV1A.1001s0020 Salix purpurea SapurV1A.1001s0020 I 0.740
PK15652.1 Cannabis sativa PK15652.1 I 0.740
SapurV1A.3302s0010 Salix purpurea SapurV1A.3302s0010 I 0.740
Thhalv10019566m.g Eutrema salsugineum Thhalv10019566m.g I 0.740
cassava12324.valid.m1 Manihot esculenta cassava12324.valid.m1 I 0.733
RAV2 Arabidopsis lyrata fgenesh2_kg.2__1141__AT1G68840.1 I 0.733
Bostr.10273s0485 Boechera stricta Bostr.10273s0485 I 0.733
Cucsa.147340 Cucumis sativus Cucsa.147340 I 0.733
Bostr.12659s0398 Boechera stricta Bostr.12659s0398 I 0.733
Lus10041487.g Linum usitatissimum Lus10041487.g I 0.733
MDP0000128924 Malus domestica MDP0000128924 I 0.733
orange1.1g017035m.g Citrus sinensis orange1.1g017035m.g I 0.733
Ciclev10031846m.g Citrus clementina Ciclev10031846m.g I 0.733
Carubv10020536m.g Capsella rubella Carubv10020536m.g I 0.733
MDP0000939633 Malus domestica MDP0000939633 I 0.733
mgf019592m Mimulus guttatus mgf019592m I 0.733
GSMUA_Achr5G09950_001 Musa acuminata GSMUA_Achr5G09950_001 I 0.733
MTR_1g093600 Medicago truncatula MTR_1g093600 I 0.733
POPTR_0008s11600 Populus trichocarpa POPTR_0008s11600 I 0.733
POPTR_0010s13930 Populus trichocarpa POPTR_0010s13930 I 0.732
gene03871-v1.0-hybrid Fragaria vesca gene03871-v1.0-hybrid I 0.727
Bra011002 Brassica rapa Bra011002 I 0.727
Cucsa.283870 Cucumis sativus Cucsa.283870 I 0.727
Ca_08436 Cicer arietinum Ca_08436 I 0.727
Gorai.005G138100 Gossypium raimondii Gorai.005G138100 I 0.727
Cla000872 Citrullus lanatus Cla000872 I 0.727
RAV2 Arabidopsis thaliana AT1G68840 D 0.727
Cla020675 Citrullus lanatus Cla020675 I 0.727
SapurV1A.0079s0450 Salix purpurea SapurV1A.0079s0450 I 0.727
GLYMA10G34760 Glycine max GLYMA10G34760 I 0.720
GRMZM2G169654 Zea mays GRMZM2G169654 I 0.720
GLYMA01G22260 Glycine max GLYMA01G22260 I 0.720
TEM1 Arabidopsis lyrata scaffold_102941.1 I 0.720
Pavir.Ca01826 Panicum virgatum Pavir.Ca01826 I 0.719
EDF3 Arabidopsis lyrata fgenesh2_kg.5__327__AT3G25730.1 I 0.713
Bo3g138550 Brassica oleracea Bo3g138550 I 0.713
Bo5g015210 Brassica oleracea Bo5g015210 I 0.713
Eucgr.B03048 Eucalyptus grandis Eucgr.B03048 I 0.713
GSMUA_Achr4G06710_001 Musa acuminata GSMUA_Achr4G06710_001 I 0.713
Carubv10009612m.g Capsella rubella Carubv10009612m.g I 0.713
VIT_14s0083g00130 Vitis vinifera VIT_14s0083g00130 I 0.713
Bra019821 Brassica rapa Bra019821 I 0.713
RAV1 Arabidopsis lyrata scaffold_101479.1 I 0.713
Cagra.3501s0173 Capsella grandiflora Cagra.3501s0173 I 0.713
Thhalv10010019m.g Eutrema salsugineum Thhalv10010019m.g I 0.713
Bra038346 Brassica rapa Bra038346 I 0.713
Bostr.0556s0243 Boechera stricta Bostr.0556s0243 I 0.713
Thhalv10007983m.g Eutrema salsugineum Thhalv10007983m.g I 0.713
OMERI01G25110 Oryza meridionalis OMERI01G25110 I 0.712
ONIVA01G31290 Oryza nivara ONIVA01G31290 I 0.712
OBART01G27360 Oryza barthii OBART01G27360 I 0.712
ORUFI01G30390 Oryza rufipogon ORUFI01G30390 I 0.712
OS01G0693400 Oryza sativa OS01G0693400 I 0.712
OPUNC01G27280 Oryza punctata OPUNC01G27280 I 0.712
ORGLA01G0225300 Oryza glaberrima ORGLA01G0225300 I 0.712
GSMUA_Achr6G01420_001 Musa acuminata GSMUA_Achr6G01420_001 I 0.707
Bra024735 Brassica rapa Bra024735 I 0.707
Bra026917 Brassica rapa Bra026917 I 0.707
Bostr.13671s0120 Boechera stricta Bostr.13671s0120 I 0.707
Carubv10019207m.g Capsella rubella Carubv10019207m.g I 0.707
ARF14 Arabidopsis thaliana AT3G25730 D 0.707
Bo2g061320 Brassica oleracea Bo2g061320 I 0.707
GLYMA20G32730 Glycine max GLYMA20G32730 I 0.707
RAV1 Arabidopsis thaliana AT1G13260 D 0.707
Bo5g043120 Brassica oleracea Bo5g043120 I 0.707
Lus10021707.g Linum usitatissimum Lus10021707.g I 0.705
GSMUA_Achr3G21100_001 Musa acuminata GSMUA_Achr3G21100_001 I 0.700
Si024576m.g Setaria italica Si024576m.g I 0.700
Pavir.J13012 Panicum virgatum Pavir.J13012 I 0.700
Thhalv10004508m.g Eutrema salsugineum Thhalv10004508m.g I 0.700