Thhalv10004508m.g (Eutrema salsugineum)
AP2,B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2)
PF02362 (B3)
IPR001471
IPR003340
Thhalv10004508m.g T010640_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ARF14
M01648_2.00
Arabidopsis thaliana
RCAACAKA

TMTGTTGY
PBM
Weirauch et al.(2014)
pTH8727
0.913 0.913
RAV1
M06692_2.00
Arabidopsis thaliana
NCAACADAWWHHWHHHKDDNN

NNHHMDDDWDDWWTHTGTTGN
Dap-seq
OMalley et al.(2016)
RAV1_colamp_a
0.880 0.880
RAV1
M06693_2.00
Arabidopsis thaliana
VCAACADAWWHHAYNHB

VDNRTDDWWTHTGTTGB
Dap-seq
OMalley et al.(2016)
RAV1_col
0.880 0.880
RAV1
M02649_2.00
Arabidopsis thaliana
VNSCAACAKWDN

NHWMTGTTGSNB
SELEX
Mathelier et al.(2014)
MA0582.1
0.880 0.880
RAV1
M02650_2.00
Arabidopsis thaliana
NHCWCCTGRNNH

DNNYCAGGWGDN
SELEX
Mathelier et al.(2014)
MA0583.1
0.880 0.880
RAV1
M09748_2.00
Arabidopsis thaliana
VNSCAACAKWDN

NHWMTGTTGSNB
Transfac
Matys et al.(2006)
P$RAV1_01
0.880 0.880
RAV1
M09749_2.00
Arabidopsis thaliana
NHCWCCTGRNNH

DNNYCAGGWGDN
Transfac
Matys et al.(2006)
P$RAV1_02
0.880 0.880
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Thhalv10004508m AP2 65 114
Thhalv10004508m B3 187 292

Links

Other AP2,B3 family TFs
Other Eutrema salsugineum TFs

166 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
EDF3 Arabidopsis lyrata fgenesh2_kg.5__327__AT3G25730.1 I 0.926
Carubv10019207m.g Capsella rubella Carubv10019207m.g I 0.920
ARF14 Arabidopsis thaliana AT3G25730 D 0.913
Bostr.0556s0243 Boechera stricta Bostr.0556s0243 I 0.907
Bo2g138650 Brassica oleracea Bo2g138650 I 0.907
Bra026509 Brassica rapa Bra026509 I 0.893
RAV1 Arabidopsis lyrata scaffold_101479.1 I 0.887
Cagra.3501s0173 Capsella grandiflora Cagra.3501s0173 I 0.887
Carubv10009612m.g Capsella rubella Carubv10009612m.g I 0.887
RAV1 Arabidopsis thaliana AT1G13260 D 0.880
Bra025159 Brassica rapa Bra025159 I 0.879
Bra019821 Brassica rapa Bra019821 I 0.873
Bo5g015210 Brassica oleracea Bo5g015210 I 0.873
Bostr.13671s0120 Boechera stricta Bostr.13671s0120 I 0.873
Thhalv10010019m.g Eutrema salsugineum Thhalv10010019m.g I 0.873
Bra026917 Brassica rapa Bra026917 I 0.860
MDP0000128924 Malus domestica MDP0000128924 I 0.833
gene03871-v1.0-hybrid Fragaria vesca gene03871-v1.0-hybrid I 0.833
Pm029015 Prunus mume Pm029015 I 0.833
PRUPE_ppa006243mg Prunus persica PRUPE_ppa006243mg I 0.833
cassava43329.valid.m1 Manihot esculenta cassava43329.valid.m1 I 0.827
orange1.1g017035m.g Citrus sinensis orange1.1g017035m.g I 0.820
Cucsa.283870 Cucumis sativus Cucsa.283870 I 0.820
RAV2 Arabidopsis lyrata fgenesh2_kg.2__1141__AT1G68840.1 I 0.820
PGSC0003DMG400000811 Solanum tuberosum PGSC0003DMG400000811 I 0.820
Ciclev10031846m.g Citrus clementina Ciclev10031846m.g I 0.820
Cla020675 Citrullus lanatus Cla020675 I 0.820
Carubv10020536m.g Capsella rubella Carubv10020536m.g I 0.813
cassava12324.valid.m1 Manihot esculenta cassava12324.valid.m1 I 0.813
RAV2 Arabidopsis thaliana AT1G68840 D 0.813
TCM_011862 Theobroma cacao TCM_011862 I 0.813
Thhalv10019566m.g Eutrema salsugineum Thhalv10019566m.g I 0.813
Gorai.008G185900 Gossypium raimondii Gorai.008G185900 I 0.813
Cagra.1157s0007 Capsella grandiflora Cagra.1157s0007 I 0.813
Bostr.10273s0485 Boechera stricta Bostr.10273s0485 I 0.813
MDP0000939633 Malus domestica MDP0000939633 I 0.813
GLYMA02G11060 Glycine max GLYMA02G11060 I 0.813
POPTR_0008s11600 Populus trichocarpa POPTR_0008s11600 I 0.813
POPTR_0010s13930 Populus trichocarpa POPTR_0010s13930 I 0.812
GLYMA10G34760 Glycine max GLYMA10G34760 I 0.812
SapurV1A.0079s0450 Salix purpurea SapurV1A.0079s0450 I 0.807
MTR_1g093600 Medicago truncatula MTR_1g093600 I 0.807
VIT_01s0011g03070 Vitis vinifera VIT_01s0011g03070 I 0.807
Solyc05g009790.1 Solanum lycopersicum Solyc05g009790.1 I 0.807
29738.m001050 Ricinus communis 29738.m001050 I 0.807
GLYMA01G22260 Glycine max GLYMA01G22260 I 0.807
SapurV1A.3302s0010 Salix purpurea SapurV1A.3302s0010 I 0.807
SapurV1A.1001s0020 Salix purpurea SapurV1A.1001s0020 I 0.807
mgf019592m Mimulus guttatus mgf019592m I 0.807
PK15652.1 Cannabis sativa PK15652.1 I 0.807
GLYMA20G32730 Glycine max GLYMA20G32730 I 0.800
Gorai.005G138100 Gossypium raimondii Gorai.005G138100 I 0.800
Ca_08436 Cicer arietinum Ca_08436 I 0.800
GSMUA_Achr5G09950_001 Musa acuminata GSMUA_Achr5G09950_001 I 0.800
Ca_24123 Cicer arietinum Ca_24123 I 0.793
Aquca_026_00225 Aquilegia coerulea Aquca_026_00225 I 0.793
Aquca_002_01106 Aquilegia coerulea Aquca_002_01106 I 0.793
Gorai.013G080000 Gossypium raimondii Gorai.013G080000 I 0.793
Bra024735 Brassica rapa Bra024735 I 0.792
Bo5g043120 Brassica oleracea Bo5g043120 I 0.792
Bra011002 Brassica rapa Bra011002 I 0.787
Bo3g138550 Brassica oleracea Bo3g138550 I 0.787
Bostr.12659s0398 Boechera stricta Bostr.12659s0398 I 0.787
Eucgr.B03048 Eucalyptus grandis Eucgr.B03048 I 0.787
Thhalv10007983m.g Eutrema salsugineum Thhalv10007983m.g I 0.787
Cla000872 Citrullus lanatus Cla000872 I 0.785
Lus10041487.g Linum usitatissimum Lus10041487.g I 0.780
TEM1 Arabidopsis lyrata scaffold_102941.1 I 0.780
Cucsa.147340 Cucumis sativus Cucsa.147340 I 0.777
AMTR_s00007p00238950 Amborella trichopoda AMTR_s00007p00238950 I 0.773
MTR_5g053920 Medicago truncatula MTR_5g053920 I 0.773
Solyc04g007000.1 Solanum lycopersicum Solyc04g007000.1 I 0.771
Pavir.J00384 Panicum virgatum Pavir.J00384 I 0.770
TRAES3BF062700040CFD_g Triticum aestivum TRAES3BF062700040CFD_g I 0.769
OBART01G27360 Oryza barthii OBART01G27360 I 0.760
TRAES3BF062600010CFD_g Triticum aestivum TRAES3BF062600010CFD_g I 0.760
GSMUA_Achr4G06710_001 Musa acuminata GSMUA_Achr4G06710_001 I 0.760
Bra038346 Brassica rapa Bra038346 I 0.760
ORGLA01G0225300 Oryza glaberrima ORGLA01G0225300 I 0.760
OPUNC05G22370 Oryza punctata OPUNC05G22370 I 0.760
ONIVA01G31290 Oryza nivara ONIVA01G31290 I 0.760
OMERI01G25110 Oryza meridionalis OMERI01G25110 I 0.760
ORUFI01G30390 Oryza rufipogon ORUFI01G30390 I 0.760
OPUNC01G27280 Oryza punctata OPUNC01G27280 I 0.760
OS01G0693400 Oryza sativa OS01G0693400 I 0.760
MLOC_5512 Hordeum vulgare MLOC_5512 I 0.758
GSMUA_Achr2G22560_001 Musa acuminata GSMUA_Achr2G22560_001 I 0.758
OB01G12600 Oryza brachyantha OB01G12600 I 0.757
BRADI2G47220 Brachypodium distachyon BRADI2G47220 I 0.755
Pavir.J13012 Panicum virgatum Pavir.J13012 I 0.753
TRIUR3_27886 Triticum urartu TRIUR3_27886 I 0.753
Pavir.Ca01826 Panicum virgatum Pavir.Ca01826 I 0.753
OMERI05G22110 Oryza meridionalis OMERI05G22110 I 0.753
GSMUA_Achr6G01420_001 Musa acuminata GSMUA_Achr6G01420_001 I 0.753
OS05G0549800 Oryza sativa OS05G0549800 I 0.753
OPUNC01G02240 Oryza punctata OPUNC01G02240 I 0.753
Bo2g061320 Brassica oleracea Bo2g061320 I 0.753
OGLUM05G26380 Oryza glumaepatula OGLUM05G26380 I 0.753
GRMZM2G059939 Zea mays GRMZM2G059939 I 0.752
BGIOSGA020315 Oryza indica BGIOSGA020315 I 0.752
MLOC_7940 Hordeum vulgare MLOC_7940 I 0.752
Sb09g027530 Sorghum bicolor Sb09g027530 I 0.752
Sb03g006590 Sorghum bicolor Sb03g006590 I 0.752
ONIVA05G26000 Oryza nivara ONIVA05G26000 I 0.752
Traes_3B_90BE2090B Triticum aestivum Traes_3B_90BE2090B I 0.752
Lus10021707.g Linum usitatissimum Lus10021707.g I 0.752
VIT_14s0083g00130 Vitis vinifera VIT_14s0083g00130 I 0.747
BRADI2G02710 Brachypodium distachyon BRADI2G02710 I 0.747
MLOC_63261 Hordeum vulgare MLOC_63261 I 0.747
LPERR01G02360 Leersia perrieri LPERR01G02360 I 0.745
TRIUR3_24851 Triticum urartu TRIUR3_24851 I 0.745
gw1.135.126.1 Physcomitrella patens gw1.135.126.1 I 0.745
SELMODRAFT_133669 Selaginella moellendorffii SELMODRAFT_133669 I 0.742
SELMODRAFT_110104 Selaginella moellendorffii SELMODRAFT_110104 I 0.742
LPERR01G23470 Leersia perrieri LPERR01G23470 I 0.742
GRMZM2G169654 Zea mays GRMZM2G169654 I 0.740
LPERR05G20600 Leersia perrieri LPERR05G20600 I 0.740
OGLUM01G31260 Oryza glumaepatula OGLUM01G31260 I 0.740
BRADI2G02720 Brachypodium distachyon BRADI2G02720 I 0.740
Traes_3B_DF7E92499 Triticum aestivum Traes_3B_DF7E92499 I 0.740
TRAES3BF108500010CFD_g Triticum aestivum TRAES3BF108500010CFD_g I 0.740
Traes_3B_DF7E924991 Triticum aestivum Traes_3B_DF7E924991 I 0.740
ORGLA01G0022600 Oryza glaberrima ORGLA01G0022600 I 0.740
TRAES3BF098200010CFD_g Triticum aestivum TRAES3BF098200010CFD_g I 0.740
Pavir.Eb00702 Panicum virgatum Pavir.Eb00702 I 0.738
Si004045m.g Setaria italica Si004045m.g I 0.736
Pavir.Ea00549 Panicum virgatum Pavir.Ea00549 I 0.736
BGIOSGA002748 Oryza indica BGIOSGA002748 I 0.733
Pavir.Ea02092 Panicum virgatum Pavir.Ea02092 I 0.733
Pavir.Eb02845 Panicum virgatum Pavir.Eb02845 I 0.733
BGIOSGA002753 Oryza indica BGIOSGA002753 I 0.733
Si024576m.g Setaria italica Si024576m.g I 0.733
OMERI01G02500 Oryza meridionalis OMERI01G02500 I 0.733
Si001909m.g Setaria italica Si001909m.g I 0.733
OS01G0141000 Oryza sativa OS01G0141000 I 0.733
LPERR01G02380 Leersia perrieri LPERR01G02380 I 0.733
GSMUA_Achr1G05400_001 Musa acuminata GSMUA_Achr1G05400_001 I 0.733
ONIVA01G02990 Oryza nivara ONIVA01G02990 I 0.733
ORUFI01G02680 Oryza rufipogon ORUFI01G02680 I 0.733
PGSC0003DMG400007458 Solanum tuberosum PGSC0003DMG400007458 I 0.733
MLOC_56567 Hordeum vulgare MLOC_56567 I 0.732
GSMUA_Achr3G21100_001 Musa acuminata GSMUA_Achr3G21100_001 I 0.732
Pavir.Ca01165 Panicum virgatum Pavir.Ca01165 I 0.731
ONIVA01G02970 Oryza nivara ONIVA01G02970 I 0.727
OMERI01G02480 Oryza meridionalis OMERI01G02480 I 0.727
MLOC_75135 Hordeum vulgare MLOC_75135 I 0.727
OBART01G02610 Oryza barthii OBART01G02610 I 0.727
OGLUM01G02850 Oryza glumaepatula OGLUM01G02850 I 0.727
BGIOSGA002747 Oryza indica BGIOSGA002747 I 0.727
Sb03g031860 Sorghum bicolor Sb03g031860 I 0.727
TRAES3BF098300010CFD_g Triticum aestivum TRAES3BF098300010CFD_g I 0.727
Pavir.J23476 Panicum virgatum Pavir.J23476 I 0.727
OS01G0140700 Oryza sativa OS01G0140700 I 0.727
ORUFI01G02660 Oryza rufipogon ORUFI01G02660 I 0.727
ORGLA01G0022400 Oryza glaberrima ORGLA01G0022400 I 0.727
TCM_019508 Theobroma cacao TCM_019508 I 0.726
e_gw1.63.77.1 Physcomitrella patens e_gw1.63.77.1 I 0.726
Ciclev10012300m.g Citrus clementina Ciclev10012300m.g I 0.721
GRMZM2G159592 Zea mays GRMZM2G159592 I 0.720
Eucgr.D00053 Eucalyptus grandis Eucgr.D00053 I 0.720
BRADI2G17610 Brachypodium distachyon BRADI2G17610 I 0.720
orange1.1g021945m.g Citrus sinensis orange1.1g021945m.g I 0.713
Pavir.Eb00701 Panicum virgatum Pavir.Eb00701 I 0.711
GSMUA_Achr8G18260_001 Musa acuminata GSMUA_Achr8G18260_001 I 0.710
Eucgr.L01673 Eucalyptus grandis Eucgr.L01673 I 0.707
MDP0000945267 Malus domestica MDP0000945267 I 0.700