LjSGA_080421.2 (Lotus japonicus)
AP2,B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2)
PF02362 (B3)
IPR001471
IPR003340
LjSGA_080421.2 T010648_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
RAV1
M06692_2.00
Arabidopsis thaliana
NCAACADAWWHHWHHHKDDNN

NNHHMDDDWDDWWTHTGTTGN
Dap-seq
OMalley et al.(2016)
RAV1_colamp_a
0.723 0.723
RAV1
M06693_2.00
Arabidopsis thaliana
VCAACADAWWHHAYNHB

VDNRTDDWWTHTGTTGB
Dap-seq
OMalley et al.(2016)
RAV1_col
0.723 0.723
RAV1
M02649_2.00
Arabidopsis thaliana
VNSCAACAKWDN

NHWMTGTTGSNB
SELEX
Mathelier et al.(2014)
MA0582.1
0.723 0.723
RAV1
M02650_2.00
Arabidopsis thaliana
NHCWCCTGRNNH

DNNYCAGGWGDN
SELEX
Mathelier et al.(2014)
MA0583.1
0.723 0.723
RAV1
M09748_2.00
Arabidopsis thaliana
VNSCAACAKWDN

NHWMTGTTGSNB
Transfac
Matys et al.(2006)
P$RAV1_01
0.723 0.723
RAV1
M09749_2.00
Arabidopsis thaliana
NHCWCCTGRNNH

DNNYCAGGWGDN
Transfac
Matys et al.(2006)
P$RAV1_02
0.723 0.723
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
LjSGA_080421.2 AP2 66 115
LjSGA_080421.2 B3 202 258

Links

Other AP2,B3 family TFs
Other Lotus japonicus TFs

20 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Cagra.1157s0007 Capsella grandiflora Cagra.1157s0007 I 0.713
Carubv10020536m.g Capsella rubella Carubv10020536m.g I 0.713
Ca_24123 Cicer arietinum Ca_24123 I 0.733
gene03871-v1.0-hybrid Fragaria vesca gene03871-v1.0-hybrid I 0.752
GLYMA20G32730 Glycine max GLYMA20G32730 I 0.703
Gorai.005G138100 Gossypium raimondii Gorai.005G138100 I 0.733
Gorai.013G080000 Gossypium raimondii Gorai.013G080000 I 0.723
Lus10041487.g Linum usitatissimum Lus10041487.g I 0.733
cassava12324.valid.m1 Manihot esculenta cassava12324.valid.m1 I 0.723
mgf019592m Mimulus guttatus mgf019592m I 0.703
OGLUM05G26380 Oryza glumaepatula OGLUM05G26380 I 0.703
OMERI05G22110 Oryza meridionalis OMERI05G22110 I 0.703
OS05G0549800 Oryza sativa OS05G0549800 I 0.703
Pavir.Eb02845 Panicum virgatum Pavir.Eb02845 I 0.703
POPTR_0008s11600 Populus trichocarpa POPTR_0008s11600 I 0.733
Pm029015 Prunus mume Pm029015 I 0.762
PRUPE_ppa006243mg Prunus persica PRUPE_ppa006243mg I 0.762
Solyc05g009790.1 Solanum lycopersicum Solyc05g009790.1 I 0.713
PGSC0003DMG400000811 Solanum tuberosum PGSC0003DMG400000811 I 0.733
GRMZM2G159592 Zea mays GRMZM2G159592 I 0.703