CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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CGI_10019880
(
Crassostrea gigas
)
AP-2
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF03299 (TF_AP-2)
IPR013854
CGI_10019880
T010707_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Tfap2a
M00111_2.00
Mus musculus
HSCCBNVRGS
SCYBNVGGSD
PBM
Badis et al.(2009)
Tcfap2a_2337
0.750
0.750
Tfap2a
M02768_2.00
Mus musculus
HGCCYBVRGGCR
YGCCYBVRGGCD
SELEX
Jolma et al.(2013)
Tcfap2a_1
0.750
0.750
Tfap2a
M02769_2.00
Mus musculus
HGCCTSRGGCD
HGCCYSAGGCD
SELEX
Jolma et al.(2013)
Tcfap2a_2
0.750
0.750
Tfap2a
M02770_2.00
Mus musculus
WGCCCYBVGGGCD
HGCCCBVRGGGCW
SELEX
Jolma et al.(2013)
Tcfap2a_3
0.750
0.750
Tfap2a
M08704_2.00
Mus musculus
SCCYCRGGSNNN
NNNSCCYGRGGS
Misc
Kulakovskiy et al.(2013)
AP2A_MOUSE.H11MO.0.A
0.750
0.750
TFAP2A
M02762_2.00
Homo sapiens
HGCCYBVRGGSD
HSCCYBVRGGCD
SELEX
Jolma et al.(2013)
TFAP2A_1
0.745
0.745
TFAP2A
M02763_2.00
Homo sapiens
HGCCYSMGGCN
NGCCKSRGGCD
SELEX
Jolma et al.(2013)
TFAP2A_2
0.745
0.745
TFAP2A
M02764_2.00
Homo sapiens
NSCCCBNVRGGSN
NSCCYBNVGGGSN
SELEX
Jolma et al.(2013)
TFAP2A_3
0.745
0.745
TFAP2A
M02765_2.00
Homo sapiens
HGCCTSRGGCD
HGCCYSAGGCD
SELEX
Jolma et al.(2013)
TFAP2A_4
0.745
0.745
TFAP2A
M02766_2.00
Homo sapiens
HGCCYBVRGGCD
HGCCYBVRGGCD
SELEX
Jolma et al.(2013)
TFAP2A_5
0.745
0.745
TFAP2A
M02767_2.00
Homo sapiens
WGCCCYNVGGGCD
HGCCCBNRGGGCW
SELEX
Jolma et al.(2013)
TFAP2A_6
0.745
0.745
TFAP2A
M04054_2.00
Homo sapiens
NGCCBSVGGCN
NGCCBSVGGCN
SELEX
Yin et al.(2017)
TFAP2A_FL_HT-SELEX
0.745
0.745
TFAP2A
M07784_2.00
Homo sapiens
NBNSCCYSRGGSCWN
NWGSCCYSRGGSNVN
ChIP-seq
Gerstein et al.(2012)
HeLa-S3_AP2ALPHA_UCD
0.745
0.745
TFAP2A
M08703_2.00
Homo sapiens
NHDSCCYCAGGSHWN
NWDSCCTGRGGSHDN
Misc
Kulakovskiy et al.(2013)
AP2A_HUMAN.H11MO.0.A
0.745
0.745
TFAP2A
M09755_2.00
Homo sapiens
GCCBBVVGS
SCBBVVGGC
Transfac
Matys et al.(2006)
V$AP2ALPHA_01
0.745
0.745
TFAP2A
M09756_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$AP2ALPHA_02
0.745
0.745
TFAP2A
M09757_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$AP2ALPHA_03
0.745
0.745
TFAP2A
M09758_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$AP2ALPHA_Q4
0.745
0.745
TFAP2A
M09759_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$AP2ALPHA_Q6
0.745
0.745
TFAP2A
M09760_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TFAP2A_09
0.745
0.745
TFAP2A
M04055_2.00
Homo sapiens
NSCCTNAGGSN
NSCCTNAGGSN
SELEX
Yin et al.(2017)
TFAP2A_FL_Methyl-HT-SELEX
0.745
0.745
Tfap2b
M00112_2.00
Mus musculus
CCBSRGGSNW
WNSCCYSVGG
PBM
Badis et al.(2009)
Tcfap2b_3988
0.735
0.735
TFAP2B
M02753_2.00
Homo sapiens
HSCCYBVRGGCD
HGCCYBVRGGSD
SELEX
Jolma et al.(2013)
TFAP2B_1
0.735
0.735
TFAP2B
M02754_2.00
Homo sapiens
HGCCTSRGGCD
HGCCYSAGGCD
SELEX
Jolma et al.(2013)
TFAP2B_2
0.735
0.735
TFAP2B
M02755_2.00
Homo sapiens
WGCCCYBVRGGCD
HGCCYBVRGGGCW
SELEX
Jolma et al.(2013)
TFAP2B_3
0.735
0.735
TFAP2B
M04046_2.00
Homo sapiens
NSCCBNVGGSN
NSCCBNVGGSN
SELEX
Yin et al.(2017)
TFAP2B_eDBD_HT-SELEX
0.735
0.735
TFAP2B
M08701_2.00
Homo sapiens
GSCYGVGGRV
BYCCBCRGSC
Misc
Kulakovskiy et al.(2013)
AP2B_HUMAN.H11MO.0.B
0.735
0.735
Tfap2b
M08705_2.00
Mus musculus
GSCYGVGGRV
BYCCBCRGSC
Misc
Kulakovskiy et al.(2013)
AP2B_MOUSE.H11MO.0.B
0.735
0.735
TFAP2B
M09750_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$AP2BETA_Q3
0.735
0.735
TFAP2B
M04047_2.00
Homo sapiens
NSCCYNRGGSD
HSCCYNRGGSN
SELEX
Yin et al.(2017)
TFAP2B_eDBD_Methyl-HT-SELEX
0.735
0.735
TFAP2E
M04050_2.00
Homo sapiens
HSCCYSRGGSD
HSCCYSRGGSD
SELEX
Yin et al.(2017)
TFAP2E_FL_HT-SELEX_1
0.730
0.730
TFAP2E
M04051_2.00
Homo sapiens
NSCCBBVGGSCA
TGSCCBVVGGSN
SELEX
Yin et al.(2017)
TFAP2E_FL_HT-SELEX_2
0.730
0.730
TFAP2E
M04052_2.00
Homo sapiens
HSCCYSRGGSD
HSCCYSRGGSD
SELEX
Yin et al.(2017)
TFAP2E_FL_Methyl-HT-SELEX_1
0.730
0.730
TFAP2E
M04053_2.00
Homo sapiens
NSCCYNRGGGCR
YGCCCYNRGGSN
SELEX
Yin et al.(2017)
TFAP2E_FL_Methyl-HT-SELEX_2
0.730
0.730
Tfap2e
M00114_2.00
Mus musculus
NNGCCYBVGG
CCBVRGGCNN
PBM
Badis et al.(2009)
Tcfap2e_3713
0.724
0.724
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
EKC26960
AP-2
1105
1307
DVFCMVDGRLSLLSSTTKYKVTIAEIQRRLSPPECLNASLLGGVLRRAKSKNGGRCLREKLDKIGLSLPAGRRKAAQTTLMTSLVEGEAVRLARDYGYLCESEFPARKCAEYNCKKYQTPDPQESMARKNMVLATKQILKEFMDILNQDRSPIGNSRPQPILEPEIQGHLTNFSLITHGFGSPAIVASLAAVQTYLTEVLKVM
Links
Other
AP-2
family TFs
Other
Crassostrea gigas
TFs
305 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy