CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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GPUH_0002219901
(
Gongylonema pulchrum
)
AP-2
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF03299 (TF_AP-2)
IPR013854
GPUH_0002219901
T011398_2.00
WormBase:ParaSite (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
AP-2
M03584_2.00
Drosophila melanogaster
HGCCYSRGGCD
HGCCYSRGGCD
SELEX
Nitta et al.(2015)
AP-2_1
0.708
0.708
AP-2
M03585_2.00
Drosophila melanogaster
HGCCYBVRGGCD
HGCCYBVRGGCD
SELEX
Nitta et al.(2015)
AP-2_2
0.708
0.708
AP-2
M03586_2.00
Drosophila melanogaster
NSCCYBNVRGGCN
NGCCYBNVRGGSN
SELEX
Nitta et al.(2015)
AP-2_3
0.708
0.708
AP-2
M03587_2.00
Drosophila melanogaster
HGCCYNRGGCD
HGCCYNRGGCD
SELEX
Nitta et al.(2015)
AP-2_4
0.708
0.708
AP-2
M03588_2.00
Drosophila melanogaster
HSCCYBVRGGSD
HSCCYBVRGGSD
SELEX
Nitta et al.(2015)
AP-2_5
0.708
0.708
AP-2
M03589_2.00
Drosophila melanogaster
HGCCYBNVRGGCD
HGCCYBNVRGGCD
SELEX
Nitta et al.(2015)
AP-2_6
0.708
0.708
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
GPUH_0002219901-mRNA-1
AP-2
74
164
ETFCAVPGRTSLLSSTTKYHVTIGEIYRRISPPECLNASLLGGILRKAKSKDGGKTLRDSLKRVGLTLPAGRRKAATVTAWTALVEGGILR
Links
Other
AP-2
family TFs
Other
Gongylonema pulchrum
TFs
120 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy