CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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PHD1
(
Saccharomyces cerevisiae
)
APSES
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF04383 (KilA-N)
IPR018004
YKL043W
T012465_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
PHD1
M00006_2.00
Saccharomyces cerevisiae
GMTGCAKG
CMTGCAKC
PBM
Badis et al.(2008)
PHD1_4559
(Direct)
(Direct)
PHD1
M01516_2.00
Saccharomyces cerevisiae
NBMTGCANN
NNTGCAKVN
PBM
Zhu et al.(2009)
Phd1
(Direct)
(Direct)
PHD1
M07437_2.00
Saccharomyces cerevisiae
NSMTGCABNN
NNVTGCAKSN
PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0355.1
(Direct)
(Direct)
PHD1
M07547_2.00
Saccharomyces cerevisiae
VCACACCCACACMCCACACMCNNMCVCH
DGBGKNNGKGTGTGGKGTGTGGGTGTGB
ChIP-exo
Rhee et al.(2011)
Phd1_1
(Direct)
(Direct)
PHD1
M07548_2.00
Saccharomyces cerevisiae
MYGCRC
GYGCRK
ChIP-exo
Rhee et al.(2011)
Phd1_2
(Direct)
(Direct)
PHD1
M07549_2.00
Saccharomyces cerevisiae
TAGCCGCCGAR
YTCGGCGGCTA
ChIP-exo
Rhee et al.(2011)
Phd1_3
(Direct)
(Direct)
PHD1
M08475_2.00
Saccharomyces cerevisiae
SCNGCRGG
CCYGCNGS
Misc
DeBoer et al.(2011)
YKL043W_393
(Direct)
(Direct)
PHD1
M08476_2.00
Saccharomyces cerevisiae
NSMTGCABNN
NNVTGCAKSN
Misc
DeBoer et al.(2011)
YKL043W_554
(Direct)
(Direct)
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
For this family, TFs with SR scores >
0.650
will likely have a similar motif
Experimental Constructs
Motif ID
Domain
From
To
Sequence
M00006_2.00
APSES
43
132
QVEANGISVVRRADNNMINGTKLLNVTKMTRGRRDGILRSEKVREVVKIGSMHLKGVWIPFERAYILAQREQILDHLYPLFVKDIESIVD
M01516_2.00
APSES
201
290
QVEANGISVVRRADNNMINGTKLLNVTKMTRGRRDGILRSEKVREVVKIGSMHLKGVWIPFERAYILAQREQILDHLYPLFVKDIESIVD
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
YKL043W
APSES
201
290
QVEANGISVVRRADNNMINGTKLLNVTKMTRGRRDGILRSEKVREVVKIGSMHLKGVWIPFERAYILAQREQILDHLYPLFVKDIESIVD
Links
Other
APSES
family TFs
Other
Saccharomyces cerevisiae
TFs
44 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy