Scas_Contig625.8 (Saccharomyces castellii)
APSES

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF04383 (KilA-N) IPR018004 Scas_Contig625.8 T013948_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
PHD1
M00006_2.00
Saccharomyces cerevisiae
GMTGCAKG

CMTGCAKC
PBM
Badis et al.(2008)
PHD1_4559
0.755 0.747
PHD1
M01516_2.00
Saccharomyces cerevisiae
NBMTGCANN

NNTGCAKVN
PBM
Zhu et al.(2009)
Phd1
0.755 0.747
PHD1
M07437_2.00
Saccharomyces cerevisiae
NSMTGCABNN

NNVTGCAKSN
PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0355.1
0.755 0.747
PHD1
M07547_2.00
Saccharomyces cerevisiae
VCACACCCACACMCCACACMCNNMCVCH

DGBGKNNGKGTGTGGKGTGTGGGTGTGB
ChIP-exo
Rhee et al.(2011)
Phd1_1
0.755 0.747
PHD1
M07548_2.00
Saccharomyces cerevisiae
MYGCRC

GYGCRK
ChIP-exo
Rhee et al.(2011)
Phd1_2
0.755 0.747
PHD1
M07549_2.00
Saccharomyces cerevisiae
TAGCCGCCGAR

YTCGGCGGCTA
ChIP-exo
Rhee et al.(2011)
Phd1_3
0.755 0.747
PHD1
M08475_2.00
Saccharomyces cerevisiae
SCNGCRGG

CCYGCNGS
Misc
DeBoer et al.(2011)
YKL043W_393
0.755 0.747
PHD1
M08476_2.00
Saccharomyces cerevisiae
NSMTGCABNN

NNVTGCAKSN
Misc
DeBoer et al.(2011)
YKL043W_554
0.755 0.747
For this family, TFs with SR scores > 0.650 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Scas_Contig625.8 APSES 224 314

Links

Other APSES family TFs
Other Saccharomyces castellii TFs

27 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
NCAS_0A04710 Naumovozyma castellii NCAS_0A04710 I 0.880
PHD1 Saccharomyces cerevisiae YKL043W D 0.755
13508_YKL043W Saccharomyces mikatae 13508_YKL043W I 0.744
13647_YKL043W Saccharomyces paradoxus 13647_YKL043W I 0.736
SU7_2011 Saccharomyces arboricola SU7_2011 I 0.717
JL09_g3139 Pichia kudriavzevii JL09_g3139 I 0.708
KAFR_0B01410 Kazachstania africana KAFR_0B01410 I 0.702
HPODL_01835 Ogataea parapolymorpha HPODL_01835 I 0.696
KLTH0D07876g Lachancea thermotolerans KLTH0D07876g I 0.690
KLTH0D07876g Kluyveromyces thermotolerans KLTH0D07876g I 0.690
SKUD_205603 Saccharomyces kudriavzevii SKUD_205603 I 0.683
14607_YKL043W Saccharomyces bayanus 14607_YKL043W I 0.673
Ecym_4584 Eremothecium cymbalariae Ecym_4584 I 0.669
KAFR_0A02120 Kazachstania africana KAFR_0A02120 I 0.665
SKUD_205409 Saccharomyces kudriavzevii SKUD_205409 I 0.661
PGUG_03651 Meyerozyma guilliermondii PGUG_03651 I 0.659
estExt_fgenesh1_pg.C_chr_3.10654 Pichia stipitis estExt_fgenesh1_pg.C_chr_3.10654 I 0.659
PGUG_03651 Candida guilliermondii PGUG_03651 I 0.659
KLLA0_F04840g Kluyveromyces lactis KLLA0_F04840g I 0.659
PICST_67427 Scheffersomyces stipitis PICST_67427 I 0.659
KUCA_T00004103001 Kuraishia capsulata KUCA_T00004103001 I 0.657
AGOS_ABR055C Ashbya gossypii AGOS_ABR055C I 0.655
AACERI_AaceriABR055C Saccharomycetaceae sp ashbya aceri AACERI_AaceriABR055C I 0.655
SAKL0D13442g Lachancea kluyveri SAKL0D13442g I 0.652
XP_002490663.1 Pichia pastoris XP_002490663.1 I 0.651
PAS_chr1-4_0530 Komagataella pastoris PAS_chr1-4_0530 I 0.651
CAGL0L01771g Candida glabrata CAGL0L01771g I 0.651