13508_YKL043W (Saccharomyces mikatae)
APSES

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF04383 (KilA-N) IPR018004 13508_YKL043W T013951_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
PHD1
M00006_2.00
Saccharomyces cerevisiae
GMTGCAKG

CMTGCAKC
PBM
Badis et al.(2008)
PHD1_4559
0.842 0.976
PHD1
M01516_2.00
Saccharomyces cerevisiae
NBMTGCANN

NNTGCAKVN
PBM
Zhu et al.(2009)
Phd1
0.842 0.976
PHD1
M07437_2.00
Saccharomyces cerevisiae
NSMTGCABNN

NNVTGCAKSN
PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0355.1
0.842 0.976
PHD1
M07547_2.00
Saccharomyces cerevisiae
VCACACCCACACMCCACACMCNNMCVCH

DGBGKNNGKGTGTGGKGTGTGGGTGTGB
ChIP-exo
Rhee et al.(2011)
Phd1_1
0.842 0.976
PHD1
M07548_2.00
Saccharomyces cerevisiae
MYGCRC

GYGCRK
ChIP-exo
Rhee et al.(2011)
Phd1_2
0.842 0.976
PHD1
M07549_2.00
Saccharomyces cerevisiae
TAGCCGCCGAR

YTCGGCGGCTA
ChIP-exo
Rhee et al.(2011)
Phd1_3
0.842 0.976
PHD1
M08475_2.00
Saccharomyces cerevisiae
SCNGCRGG

CCYGCNGS
Misc
DeBoer et al.(2011)
YKL043W_393
0.842 0.976
PHD1
M08476_2.00
Saccharomyces cerevisiae
NSMTGCABNN

NNVTGCAKSN
Misc
DeBoer et al.(2011)
YKL043W_554
0.842 0.976
SOK2
M00007_2.00
Saccharomyces cerevisiae
NCMTGCAKGNN

NNCMTGCAKGN
PBM
Badis et al.(2008)
SOK2_4560
0.655 0.821
SOK2
M07438_2.00
Saccharomyces cerevisiae
NNBMTGCAKNN

NNMTGCAKVNN
PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0385.1
0.655 0.821
SOK2
M08477_2.00
Saccharomyces cerevisiae
HNBCTGCR

YGCAGVND
Misc
DeBoer et al.(2011)
YMR016C_404
0.655 0.821
For this family, TFs with SR scores > 0.650 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
13508_YKL043W APSES 199 287

Links

Other APSES family TFs
Other Saccharomyces mikatae TFs

Invalid Input OrderBy

48 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action