ARID5A (Bos taurus)
ARID/BRIGHT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF01388 (ARID) IPR001606 ENSBTAG00000014090 T014453_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Arid5a
M00116_2.00
Mus musculus
NHAATATTDNN

NNHAATATTDN
PBM
Badis et al.(2009)
Arid5a_3770
0.785 1.000
Arid5a
M01663_2.00
Rattus norvegicus
NNNRWATHNN

NNDATWYNNN
PBM
Weirauch et al.(2014)
pTH5121
0.785 1.000
arid6
M01657_2.00
Danio rerio
NNRWATYN

NRATWYNN
PBM
Weirauch et al.(2014)
pTH5120
0.649 0.647
Arid5b
M01661_2.00
Mus musculus
NDATWHNN

NNDWATHN
PBM
Weirauch et al.(2014)
pTH4426
0.632 0.753
ARID5B
M08707_2.00
Homo sapiens
DNBKDRTATTSKD

HMSAATAYHMVNH
Misc
Kulakovskiy et al.(2013)
ARI5B_HUMAN.H11MO.0.C
0.632 0.753
Arid5b
M08708_2.00
Mus musculus
DNBKDRTATTSKD

HMSAATAYHMVNH
Misc
Kulakovskiy et al.(2013)
ARI5B_MOUSE.H11MO.0.C
0.632 0.753
ARID5B
M09767_2.00
Homo sapiens
KBDGTATTGTRSWB

VWSYACAATACHVM
Transfac
Matys et al.(2006)
V$MRF2_01
0.632 0.753
e_gw.4.260.1_CONSTRUCT
M01668_2.00
PBM CONSTRUCTS
NNNDATHNNN

NNNDATHNNN
PBM
Weirauch et al.(2014)
pTH5122
0.493 0.588
For this family, TFs with SR scores > 0.422 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSBTAP00000026200 ARID/BRIGHT 54 139
ENSBTAP00000054489 ARID/BRIGHT 54 139

Links

Other ARID/BRIGHT family TFs
Other Bos taurus TFs

155 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
29900.m001610 Ricinus communis 29900.m001610 I 0.000
AMTR_s00007p00170710 Amborella trichopoda AMTR_s00007p00170710 I 0.000
Aquca_081_00012 Aquilegia coerulea Aquca_081_00012 I 0.000
BGIOSGA003013 Oryza indica BGIOSGA003013 I 0.000
Bostr.20505s0075 Boechera stricta Bostr.20505s0075 N 0.000
BRADI1G67500 Brachypodium distachyon BRADI1G67500 I 0.000
BRADI2G07050 Brachypodium distachyon BRADI2G07050 N 0.000
cassava18812.valid.m1 Manihot esculenta cassava18812.valid.m1 I 0.000
cassava32077.m1 Manihot esculenta cassava32077.m1 I 0.000
Ciclev10016289m.g Citrus clementina Ciclev10016289m.g I 0.000
Cla019977 Citrullus lanatus Cla019977 I 0.000
Cucsa.213230 Cucumis sativus Cucsa.213230 I 0.000
Eucgr.E02743 Eucalyptus grandis Eucgr.E02743 I 0.000
Eucgr.K01103 Eucalyptus grandis Eucgr.K01103 N 0.000
evm.TU.supercontig_7.53 Carica papaya evm.TU.supercontig_7.53 I 0.000
gene29828-v1.0-hybrid Fragaria vesca gene29828-v1.0-hybrid I 0.000
GLYMA07G32690 Glycine max GLYMA07G32690 I 0.000
Gorai.009G163400 Gossypium raimondii Gorai.009G163400 I 0.000
Gorai.011G034000 Gossypium raimondii Gorai.011G034000 I 0.000
GRMZM2G016039 Zea mays GRMZM2G016039 I 0.000
GRMZM2G043854 Zea mays GRMZM2G043854 I 0.000
GRMZM2G166642 Zea mays GRMZM2G166642 I 0.000
GSMUA_Achr10G14370_001 Musa acuminata GSMUA_Achr10G14370_001 N 0.000
GSMUA_Achr1G21280_001 Musa acuminata GSMUA_Achr1G21280_001 I 0.000
GSMUA_Achr2G20040_001 Musa acuminata GSMUA_Achr2G20040_001 N 0.000
GSMUA_Achr3G03510_001 Musa acuminata GSMUA_Achr3G03510_001 N 0.000
GSMUA_Achr7G10740_001 Musa acuminata GSMUA_Achr7G10740_001 I 0.000
LPERR01G07000 Leersia perrieri LPERR01G07000 I 0.000
LPERR03G10060 Leersia perrieri LPERR03G10060 I 0.000
Lus10001885.g Linum usitatissimum Lus10001885.g I 0.000
Lus10013917.g Linum usitatissimum Lus10013917.g I 0.000
MDP0000249969 Malus domestica MDP0000249969 I 0.000
MDP0000256492 Malus domestica MDP0000256492 N 0.000
mgf022146m Mimulus guttatus mgf022146m N 0.000
MLOC_64390 Hordeum vulgare MLOC_64390 I 0.000
OB01G17480 Oryza brachyantha OB01G17480 I 0.000
OB03G21490 Oryza brachyantha OB03G21490 I 0.000
OBART03G11320 Oryza barthii OBART03G11320 I 0.000
OGLUM01G08450 Oryza glumaepatula OGLUM01G08450 I 0.000
OGLUM03G11280 Oryza glumaepatula OGLUM03G11280 I 0.000
OLONG_004075 Oryza longistaminata OLONG_004075 I 0.000
OMERI01G07330 Oryza meridionalis OMERI01G07330 I 0.000
ONIVA01G09540 Oryza nivara ONIVA01G09540 I 0.000
ONIVA03G12280 Oryza nivara ONIVA03G12280 I 0.000
OPUNC01G07130 Oryza punctata OPUNC01G07130 I 0.000
orange1.1g024670m.g Citrus sinensis orange1.1g024670m.g I 0.000
ORGLA01G0065100 Oryza glaberrima ORGLA01G0065100 I 0.000
ORGLA03G0109100 Oryza glaberrima ORGLA03G0109100 I 0.000
ORUFI01G08040 Oryza rufipogon ORUFI01G08040 I 0.000
ORUFI03G11650 Oryza rufipogon ORUFI03G11650 I 0.000
OS01G0218100 Oryza sativa OS01G0218100 I 0.000
OS03G0260600 Oryza sativa OS03G0260600 I 0.000
Pavir.Ea00157 Panicum virgatum Pavir.Ea00157 I 0.000
Pavir.Ib01099 Panicum virgatum Pavir.Ib01099 I 0.000
PGSC0003DMG400010208 Solanum tuberosum PGSC0003DMG400010208 I 0.000
PK20225.1 Cannabis sativa PK20225.1 D 0.000
PRUPE_ppa021837mg Prunus persica PRUPE_ppa021837mg N 0.000
SapurV1A.0029s0640 Salix purpurea SapurV1A.0029s0640 N 0.000
SapurV1A.1185s0010 Salix purpurea SapurV1A.1185s0010 I 0.000
SapurV1A.1821s0030 Salix purpurea SapurV1A.1821s0030 I 0.000
Sb01g040450 Sorghum bicolor Sb01g040450 I 0.000
Sb03g001730 Sorghum bicolor Sb03g001730 I 0.000
Si002517m.g Setaria italica Si002517m.g I 0.000
Si039730m.g Setaria italica Si039730m.g I 0.000
Solyc02g076920.2 Solanum lycopersicum Solyc02g076920.2 I 0.000
TCM_029711 Theobroma cacao TCM_029711 I 0.000
TRAES3BF011300020CFD_g Triticum aestivum TRAES3BF011300020CFD_g I 0.000
VIT_14s0068g01580 Vitis vinifera VIT_14s0068g01580 I 0.000