CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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OS06G0622300
(
Oryza sativa
)
ARID/BRIGHT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF01388 (ARID)
IPR001606
OS06G0622300
T015377_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ARID3
M06695_2.00
Arabidopsis thaliana
AAWWHNAAATYAAWW
WWTTRATTTNDWWTT
Dap-seq
OMalley et al.(2016)
AT2G17410_col_a
0.724
0.835
ARID6
M06694_2.00
Arabidopsis thaliana
HAATTRAWTTN
NAAWTYAATTD
Dap-seq
OMalley et al.(2016)
AT1G20910_col_a
0.629
0.753
For this family, TFs with SR scores >
0.422
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
OS06T0622300-01
ARID/BRIGHT
166
251
EQAAFMKELERFYREKLMEFKPPKFYGEGLNCLKLWRQVTGLGGYDQVTSCKLWRQVGESFKPPKTCTTVSWTFRNFYEKALLEYE
OS06T0622300-02
ARID/BRIGHT
166
222
EQAAFMKELERFYREKLMEFKPPKFYGEGLNCLKLWRQVTGLGGYDQVMCTACLLTS
OS06T0622300-03
ARID/BRIGHT
38
123
EQAAFMKELERFYREKLMEFKPPKFYGEGLNCLKLWRQVTGLGGYDQVTSCKLWRQVGESFKPPKTCTTVSWTFRNFYEKALLEYE
OS06T0622300-04
ARID/BRIGHT
1
52
LWRQVTGLGGYDQVTSCKLWRQVGESFKPPKTCTTVSWTFRNFYEKALLEYE
Links
Other
ARID/BRIGHT
family TFs
Other
Oryza sativa
TFs
220 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
OB06G29250
Oryza brachyantha
OB06G29250
I
0.785
Pavir.Db00824
Panicum virgatum
Pavir.Db00824
I
0.785
BGIOSGA023283
Oryza indica
BGIOSGA023283
I
0.785
Si006372m.g
Setaria italica
Si006372m.g
I
0.785
GRMZM2G180654
Zea mays
GRMZM2G180654
I
0.785
Sb10g024400
Sorghum bicolor
Sb10g024400
I
0.785
GRMZM5G883993
Zea mays
GRMZM5G883993
I
0.785
Si017073m.g
Setaria italica
Si017073m.g
I
0.764
OB02G37240
Oryza brachyantha
OB02G37240
I
0.764
Traes_6AL_D304A3C3B
Triticum aestivum
Traes_6AL_D304A3C3B
I
0.764
F775_06069
Aegilops tauschii
F775_06069
I
0.764
ORUFI02G31730
Oryza rufipogon
ORUFI02G31730
I
0.764
GRMZM2G421899
Zea mays
GRMZM2G421899
I
0.764
TRIUR3_34317
Triticum urartu
TRIUR3_34317
I
0.764
Traes_6DL_E6E385C31
Triticum aestivum
Traes_6DL_E6E385C31
I
0.764
OBART02G30070
Oryza barthii
OBART02G30070
I
0.764
OS02G0714300
Oryza sativa
OS02G0714300
I
0.764
OPUNC02G27630
Oryza punctata
OPUNC02G27630
I
0.764
ORGLA02G0256100
Oryza glaberrima
ORGLA02G0256100
I
0.764
PDK_20s1326081g004
Phoenix dactylifera
PDK_20s1326081g004
I
0.764
AMTR_s00022p00128600
Amborella trichopoda
AMTR_s00022p00128600
I
0.764
Pavir.Ab03084
Panicum virgatum
Pavir.Ab03084
I
0.764
BGIOSGA005739
Oryza indica
BGIOSGA005739
I
0.764
Pavir.Aa00633
Panicum virgatum
Pavir.Aa00633
I
0.764
Sb04g029990
Sorghum bicolor
Sb04g029990
I
0.764
OMERI02G28920
Oryza meridionalis
OMERI02G28920
I
0.764
OGLUM02G30740
Oryza glumaepatula
OGLUM02G30740
I
0.764
ONIVA02G32840
Oryza nivara
ONIVA02G32840
I
0.764
Cla009111
Citrullus lanatus
Cla009111
I
0.762
Pm026967
Prunus mume
Pm026967
I
0.762
GLYMA11G09370
Glycine max
GLYMA11G09370
I
0.762
Ca_10698
Cicer arietinum
Ca_10698
I
0.762
29682.m000576
Ricinus communis
29682.m000576
I
0.762
VIT_04s0044g01840
Vitis vinifera
VIT_04s0044g01840
I
0.762
PRUPE_ppa003469mg
Prunus persica
PRUPE_ppa003469mg
I
0.762
GLYMA01G36040
Glycine max
GLYMA01G36040
I
0.762
orange1.1g009744m.g
Citrus sinensis
orange1.1g009744m.g
I
0.762
Gorai.003G000800
Gossypium raimondii
Gorai.003G000800
I
0.762
Ciclev10025351m.g
Citrus clementina
Ciclev10025351m.g
I
0.762
MDP0000834789
Malus domestica
MDP0000834789
I
0.762
PK12537.1
Cannabis sativa
PK12537.1
I
0.762
Cucsa.323280
Cucumis sativus
Cucsa.323280
I
0.762
cassava23401.valid.m1
Manihot esculenta
cassava23401.valid.m1
I
0.762
cassava24840.valid.m1
Manihot esculenta
cassava24840.valid.m1
I
0.762
MDP0000188323
Malus domestica
MDP0000188323
I
0.762
Eucgr.I02198
Eucalyptus grandis
Eucgr.I02198
I
0.762
LPERR02G24480
Leersia perrieri
LPERR02G24480
I
0.751
BRADI1G55550
Brachypodium distachyon
BRADI1G55550
I
0.749
Bo9g024490
Brassica oleracea
Bo9g024490
I
0.747
Bra037275
Brassica rapa
Bra037275
I
0.747
Traes_2BS_B3411790F
Triticum aestivum
Traes_2BS_B3411790F
I
0.747
Traes_2DL_C465ACBE4
Triticum aestivum
Traes_2DL_C465ACBE4
I
0.747
Traes_2AS_49D6010DA1
Triticum aestivum
Traes_2AS_49D6010DA1
I
0.747
PDK_20s1315201g001
Phoenix dactylifera
PDK_20s1315201g001
I
0.744
SapurV1A.0554s0250
Salix purpurea
SapurV1A.0554s0250
I
0.741
POPTR_0004s21870
Populus trichocarpa
POPTR_0004s21870
I
0.741
POPTR_0002s00550
Populus trichocarpa
POPTR_0002s00550
I
0.741
orange1.1g012780m.g
Citrus sinensis
orange1.1g012780m.g
I
0.741
SapurV1A.0016s0160
Salix purpurea
SapurV1A.0016s0160
I
0.741
Gorai.002G112400
Gossypium raimondii
Gorai.002G112400
I
0.741
mgf002691m
Mimulus guttatus
mgf002691m
I
0.741
mgf001698m
Mimulus guttatus
mgf001698m
I
0.741
cassava27165.m1
Manihot esculenta
cassava27165.m1
I
0.741
Ciclev10001099m.g
Citrus clementina
Ciclev10001099m.g
I
0.741
Eucgr.F01815
Eucalyptus grandis
Eucgr.F01815
I
0.741
Lus10001618.g
Linum usitatissimum
Lus10001618.g
I
0.741
30170.m013806
Ricinus communis
30170.m013806
I
0.741
TCM_034809
Theobroma cacao
TCM_034809
I
0.741
Lus10022981.g
Linum usitatissimum
Lus10022981.g
I
0.741
Traes_6BL_936B5B999
Triticum aestivum
Traes_6BL_936B5B999
I
0.741
BRADI3G53270
Brachypodium distachyon
BRADI3G53270
I
0.741
GRMZM2G110109
Zea mays
GRMZM2G110109
I
0.741
OMERI01G31330
Oryza meridionalis
OMERI01G31330
I
0.735
OGLUM06G22430
Oryza glumaepatula
OGLUM06G22430
I
0.735
OBART06G21220
Oryza barthii
OBART06G21220
I
0.735
OLONG_022248
Oryza longistaminata
OLONG_022248
I
0.735
ONIVA06G25180
Oryza nivara
ONIVA06G25180
I
0.735
ORUFI06G22870
Oryza rufipogon
ORUFI06G22870
I
0.735
MTR_5g024920
Medicago truncatula
MTR_5g024920
I
0.728
VIT_18s0122g00560
Vitis vinifera
VIT_18s0122g00560
I
0.728
PRUPE_ppa006712mg
Prunus persica
PRUPE_ppa006712mg
I
0.728
Pm020703
Prunus mume
Pm020703
I
0.728
Gorai.012G137700
Gossypium raimondii
Gorai.012G137700
I
0.728
TCM_007605
Theobroma cacao
TCM_007605
I
0.728
PRUPE_ppa001071mg
Prunus persica
PRUPE_ppa001071mg
I
0.728
Pm022898
Prunus mume
Pm022898
I
0.728
30162.m001290
Ricinus communis
30162.m001290
I
0.728
fgenesh2_kg.3__3325__AT2G17410.1
Arabidopsis lyrata
fgenesh2_kg.3__3325__AT2G17410.1
I
0.724
ARID3
Arabidopsis thaliana
AT2G17410
D
0.724
Carubv10012979m.g
Capsella rubella
Carubv10012979m.g
I
0.724
Thhalv10022553m.g
Eutrema salsugineum
Thhalv10022553m.g
I
0.724
GSMUA_AchrUn_randomG12940_001
Musa acuminata
GSMUA_AchrUn_randomG12940_001
I
0.724
Cagra.6788s0003
Capsella grandiflora
Cagra.6788s0003
I
0.724
GLYMA09G32820
Glycine max
GLYMA09G32820
I
0.718
Ca_04797
Cicer arietinum
Ca_04797
I
0.718
GLYMA04G01560
Glycine max
GLYMA04G01560
I
0.718
MTR_3g116200
Medicago truncatula
MTR_3g116200
I
0.718
Solyc04g082820.2
Solanum lycopersicum
Solyc04g082820.2
I
0.718
chr1.CM0150.370.nc
Lotus japonicus
chr1.CM0150.370.nc
I
0.718
PGSC0003DMG400010001
Solanum tuberosum
PGSC0003DMG400010001
I
0.718
GLYMA06G01640
Glycine max
GLYMA06G01640
I
0.718
Bra002058
Brassica rapa
Bra002058
I
0.716
cassava10018.m1
Manihot esculenta
cassava10018.m1
I
0.713
mg023226m
Mimulus guttatus
mg023226m
I
0.712
mgf014392m
Mimulus guttatus
mgf014392m
I
0.712
Aquca_007_00955
Aquilegia coerulea
Aquca_007_00955
I
0.708
PK02181.1
Cannabis sativa
PK02181.1
I
0.705
AT1G76510
Arabidopsis thaliana
AT1G76510
I
0.705
Cagra.2281s0033
Capsella grandiflora
Cagra.2281s0033
I
0.705
Ciclev10030351m.g
Citrus clementina
Ciclev10030351m.g
I
0.705
fgenesh2_kg.2__1939__AT1G76510.1
Arabidopsis lyrata
fgenesh2_kg.2__1939__AT1G76510.1
I
0.705
evm.TU.supercontig_26.2
Carica papaya
evm.TU.supercontig_26.2
I
0.705
Carubv10020299m.g
Capsella rubella
Carubv10020299m.g
I
0.705
MDP0000890776
Malus domestica
MDP0000890776
I
0.705
Thhalv10018578m.g
Eutrema salsugineum
Thhalv10018578m.g
I
0.705
orange1.1g004663m.g
Citrus sinensis
orange1.1g004663m.g
I
0.705
Bostr.20129s0090
Boechera stricta
Bostr.20129s0090
I
0.705
gene17116-v1.0-hybrid
Fragaria vesca
gene17116-v1.0-hybrid
I
0.704
Eucgr.I01546
Eucalyptus grandis
Eucgr.I01546
I
0.696
Bo6g120610
Brassica oleracea
Bo6g120610
I
0.687
F775_22367
Aegilops tauschii
F775_22367
N
0.687
PDK_20s1315202g001
Phoenix dactylifera
PDK_20s1315202g001
N
0.686
GLYMA16G21840
Glycine max
GLYMA16G21840
I
0.686
ORGLA07G0233500
Oryza glaberrima
ORGLA07G0233500
N
0.686
Pavir.J25952
Panicum virgatum
Pavir.J25952
N
0.686
Bostr.18351s0201
Boechera stricta
Bostr.18351s0201
I
0.681
mgf005009m
Mimulus guttatus
mgf005009m
I
0.678
Lus10016045.g
Linum usitatissimum
Lus10016045.g
I
0.672
POPTR_0011s14850
Populus trichocarpa
POPTR_0011s14850
I
0.663
SapurV1A.0047s0480
Salix purpurea
SapurV1A.0047s0480
I
0.663
evm.TU.supercontig_70.18
Carica papaya
evm.TU.supercontig_70.18
N
0.663
GSMUA_Achr4G19240_001
Musa acuminata
GSMUA_Achr4G19240_001
I
0.651
GLYMA05G10756
Glycine max
GLYMA05G10756
I
0.650
Solyc12g094730.1
Solanum lycopersicum
Solyc12g094730.1
I
0.650
SELMODRAFT_271464
Selaginella moellendorffii
SELMODRAFT_271464
I
0.649
SELMODRAFT_445202
Selaginella moellendorffii
SELMODRAFT_445202
I
0.649
e_gw1.66.61.1
Physcomitrella patens
e_gw1.66.61.1
I
0.649
MLOC_7381
Hordeum vulgare
MLOC_7381
N
0.648
TRIUR3_29596
Triticum urartu
TRIUR3_29596
N
0.648
Bo7g014510
Brassica oleracea
Bo7g014510
I
0.647
PGSC0003DMG400021771
Solanum tuberosum
PGSC0003DMG400021771
I
0.640
Bostr.7128s0681
Boechera stricta
Bostr.7128s0681
I
0.638
Thhalv10007750m.g
Eutrema salsugineum
Thhalv10007750m.g
I
0.629
fgenesh2_kg.1__2281__AT1G20910.1
Arabidopsis lyrata
fgenesh2_kg.1__2281__AT1G20910.1
I
0.629
ARID6
Arabidopsis thaliana
AT1G20910
D
0.629
SapurV1A.0478s0090
Salix purpurea
SapurV1A.0478s0090
I
0.628
POPTR_0001s46070
Populus trichocarpa
POPTR_0001s46070
I
0.628
Carubv10009301m.g
Capsella rubella
Carubv10009301m.g
I
0.615
Cagra.6160s0006
Capsella grandiflora
Cagra.6160s0006
I
0.615
gene11760-v1.0-hybrid
Fragaria vesca
gene11760-v1.0-hybrid
N
0.615
GSMUA_Achr3G11660_001
Musa acuminata
GSMUA_Achr3G11660_001
I
0.613
gw1.131.40.1
Physcomitrella patens
gw1.131.40.1
I
0.609
LPERR06G17780
Leersia perrieri
LPERR06G17780
I
0.608
Pavir.Da00612
Panicum virgatum
Pavir.Da00612
N
0.608
Bra015737
Brassica rapa
Bra015737
N
0.606
OPUNC06G19340
Oryza punctata
OPUNC06G19340
I
0.595
Bo7g061260
Brassica oleracea
Bo7g061260
I
0.591
Bra012257
Brassica rapa
Bra012257
I
0.591
F775_31416
Aegilops tauschii
F775_31416
N
0.571
Traes_2AS_40ED2C7BC
Triticum aestivum
Traes_2AS_40ED2C7BC
N
0.571
SapurV1A.0216s0430
Salix purpurea
SapurV1A.0216s0430
N
0.565
SapurV1A.2929s0030
Salix purpurea
SapurV1A.2929s0030
N
0.565
PGSC0003DMG400047019
Solanum tuberosum
PGSC0003DMG400047019
N
0.560
Bo5g030830
Brassica oleracea
Bo5g030830
I
0.556
Bo8g070520
Brassica oleracea
Bo8g070520
I
0.556
Bra025855
Brassica rapa
Bra025855
I
0.556
Bra016443
Brassica rapa
Bra016443
I
0.556
ENSCSAVG00000005880
Ciona savignyi
ENSCSAVG00000005880
N
0.522
Genemark1.2983_g
Coccomyxa subellipsoidea C169
Genemark1.2983_g
N
0.520
MESCA003685
Megaselia scalaris
MESCA003685
N
0.511
GD20218
Drosophila simulans
FBgn0191696
N
0.511
ACOM023832
Anopheles coluzzii
ACOM023832
N
0.511
GL12242
Drosophila persimilis
FBgn0149849
N
0.511
PHUM027610
Pediculus humanus
PHUM027610
N
0.508
HHAL003716-PA
Halyomorpha halys
HHAL003716-PA
N
0.508
SPU_003500
Strongylocentrotus purpuratus
SPU_003500
N
0.497
ENSCJAG00000034027
Callithrix jacchus
ENSCJAG00000034027
N
0.497
SMTD_0000131801
Schistosoma mattheei
SMTD_0000131801
N
0.497
SPER_0003392901
Spirometra erinaceieuropaei
SPER_0003392901
N
0.497
Sjc_0111140
Schistosoma japonicum
Sjc_0111140
N
0.497
SPER_0000246801
Spirometra erinaceieuropaei
SPER_0000246801
N
0.497
SROB_0001561301
Schistosoma rodhaini
SROB_0001561301
N
0.497
SBAD_0000429301
Soboliphyme baturini
SBAD_0000429301
N
0.497
SPER_0003827801
Spirometra erinaceieuropaei
SPER_0003827801
N
0.497
gene12982-v1.0-hybrid
Fragaria vesca
gene12982-v1.0-hybrid
I
0.485
GK21672
Drosophila willistoni
FBgn0223657
N
0.482
Solyc04g025930.1
Solanum lycopersicum
Solyc04g025930.1
N
0.479
PDK_20s1490591g001
Phoenix dactylifera
PDK_20s1490591g001
N
0.478
Myotis_brandtii_ARID2_10029491
Myotis brandtii
Myotis_brandtii_ARID2_10029491
N
0.477
ASIM_0001975501
Anisakis simplex
ASIM_0001975501
N
0.471
Solyc12g038740.1
Solanum lycopersicum
Solyc12g038740.1
N
0.469
SPER_0000445801
Spirometra erinaceieuropaei
SPER_0000445801
N
0.463
e_gw1.8.356.1
Monosiga brevicollis
e_gw1.8.356.1
N
0.462
YQE_11989
Dendroctonus ponderosae
YQE_11989
N
0.461
Cflo_11029--XP_001120115.1_APIME
Camponotus floridanus
Cflo_11029--XP_001120115.1_APIME
N
0.460
ACEP25970
Atta cephalotes
ACEP25970
N
0.460
TCM_000019
Theobroma cacao
TCM_000019
I
0.459
RPRC013496
Rhodnius prolixus
RPRC013496
N
0.459
NV31651
Nasonia vitripennis
NV31651
N
0.458
Myotis_brandtii_Arid3c_10010321
Myotis brandtii
Myotis_brandtii_Arid3c_10010321
N
0.458
GG.C169_S05_00378
Chlorella vulgaris
GG.C169_S05_00378
N
0.456
SMTD_0001549501
Schistosoma mattheei
SMTD_0001549501
N
0.452
TRE_0000846701
Trichobilharzia regenti
TRE_0000846701
N
0.452
BOTBODRAFT_182015
Botryobasidium botryosum
BOTBODRAFT_182015
N
0.452
ANCCAN_16550
Ancylostoma caninum
ANCCAN_16550
N
0.452
SPU_009801
Strongylocentrotus purpuratus
SPU_009801
N
0.447
MCINX010724
Melitaea cinxia
MCINX010724
N
0.438
SVUK_0000804601
Strongylus vulgaris
SVUK_0000804601
N
0.438
HCOI00647600
Haemonchus contortus
HCOI00647600
N
0.438
Hsal_11763--XP_001120115.1_APIME
Harpegnathos saltator
Hsal_11763--XP_001120115.1_APIME
N
0.438
OESDEN_17751
Oesophagostomum dentatum
OESDEN_17751
N
0.438
PHACADRAFT_251691
Phanerochaete carnosa
PHACADRAFT_251691
N
0.436
Genemark.397_g
Heterobasidion annosum
Genemark.397_g
N
0.433
Lus10008531.g
Linum usitatissimum
Lus10008531.g
N
0.433
cassava33852.m1
Manihot esculenta
cassava33852.m1
N
0.433
PGSC0003DMG401018896
Solanum tuberosum
PGSC0003DMG401018896
N
0.433
cassava32082.m1
Manihot esculenta
cassava32082.m1
N
0.433
HPBE_0000220801
Heligmosomoides bakeri
HPBE_0000220801
N
0.427
BOTBODRAFT_174219
Botryobasidium botryosum
BOTBODRAFT_174219
N
0.427