Alligator_sinensis_CCG004972.1 (Alligator sinensis)
ARID/BRIGHT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF01388 (ARID) IPR001606 Alligator_sinensis_CCG004972.1 T015853_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
TTHERM_00243900
M01666_2.00
Tetrahymena thermophila
NDDATYANN

NNTRATHHN
PBM
Weirauch et al.(2014)
pTH5128
0.427 0.400
GSPATT00004674001
M01665_2.00
Paramecium tetraurelia
NNATYHNN

NNDRATNN
PBM
Weirauch et al.(2014)
pTH5124
0.427 0.388
For this family, TFs with SR scores > 0.422 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Alligator_sinensis_CCG004972.1 ARID/BRIGHT 15 95

Links

Other ARID/BRIGHT family TFs
Other Alligator sinensis TFs

10 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Cla007529 Citrullus lanatus Cla007529 I 0.439
Cla016376 Citrullus lanatus Cla016376 I 0.437
Cmyd_10012612 Chelonia mydas Cmyd_10012612 I 0.737
Arid2 Mus musculus ENSMUSG00000033237 I 0.691
ENSXMAG00000008966 Xiphophorus maculatus ENSXMAG00000008966 I 0.587
GSPATT00004674001 Paramecium tetraurelia GSPATT00004674001 D 0.427
orange1.1g020305m.g Citrus sinensis orange1.1g020305m.g I 0.428
Sakowv30024151m.g Saccoglossus kowalevskii Sakowv30024151m.g N 0.471
SPU_023530 Strongylocentrotus purpuratus SPU_023530 I 0.467
TTHERM_00243900 Tetrahymena thermophila TTHERM_00243900 D 0.427