Alligator_sinensis_CCG013281.1 (Alligator sinensis)
ARID/BRIGHT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF01388 (ARID) IPR001606 Alligator_sinensis_CCG013281.1 T015855_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Arid5a
M00116_2.00
Mus musculus
NHAATATTDNN

NNHAATATTDN
PBM
Badis et al.(2009)
Arid5a_3770
0.771 0.965
Arid5a
M01663_2.00
Rattus norvegicus
NNNRWATHNN

NNDATWYNNN
PBM
Weirauch et al.(2014)
pTH5121
0.771 0.965
arid6
M01657_2.00
Danio rerio
NNRWATYN

NRATWYNN
PBM
Weirauch et al.(2014)
pTH5120
0.663 0.659
Arid5b
M01661_2.00
Mus musculus
NDATWHNN

NNDWATHN
PBM
Weirauch et al.(2014)
pTH4426
0.646 0.765
ARID5B
M08707_2.00
Homo sapiens
DNBKDRTATTSKD

HMSAATAYHMVNH
Misc
Kulakovskiy et al.(2013)
ARI5B_HUMAN.H11MO.0.C
0.646 0.765
Arid5b
M08708_2.00
Mus musculus
DNBKDRTATTSKD

HMSAATAYHMVNH
Misc
Kulakovskiy et al.(2013)
ARI5B_MOUSE.H11MO.0.C
0.646 0.765
ARID5B
M09767_2.00
Homo sapiens
KBDGTATTGTRSWB

VWSYACAATACHVM
Transfac
Matys et al.(2006)
V$MRF2_01
0.646 0.765
e_gw.4.260.1_CONSTRUCT
M01668_2.00
PBM CONSTRUCTS
NNNDATHNNN

NNNDATHNNN
PBM
Weirauch et al.(2014)
pTH5122
0.506 0.600
For this family, TFs with SR scores > 0.422 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Alligator_sinensis_CCG013281.1 ARID/BRIGHT 120 205

Links

Other ARID/BRIGHT family TFs
Other Alligator sinensis TFs

152 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
A1O1_00688 Capronia coronata A1O1_00688 N 0.000
A1O7_00797 Cladophialophora yegresii A1O7_00797 N 0.000
AUEXF2481DRAFT_623196 Aureobasidium subglaciale AUEXF2481DRAFT_623196 I 0.000
BAUCODRAFT_384024 Baudoinia compniacensis BAUCODRAFT_384024 I 0.000
BGHDH14_bgh01862 Blumeria graminis BGHDH14_bgh01862 I 0.000
estExt_fgenesh3_pm.C_40367 Neurospora discreta estExt_fgenesh3_pm.C_40367 I 0.000
e_gw1.1.1452.1 Nectria haematococca e_gw1.1.1452.1 I 0.000
e_gw1.17.45.1 Mycosphaerella fijiensis e_gw1.17.45.1 N 0.000
FFUJ_00922 Fusarium fujikuroi FFUJ_00922 I 0.000
FGRRES_00404 Fusarium graminearum FGRRES_00404 I 0.000
FPSE_00066 Fusarium pseudograminearum FPSE_00066 I 0.000
G647_00846 Cladophialophora carrionii G647_00846 N 0.000
GGTG_01235 Gaeumannomyces graminis GGTG_01235 I 0.000
gw1.3.136.1 Mycosphaerella graminicola gw1.3.136.1 N 0.000
HMPREF1120_06272 Exophiala dermatitidis HMPREF1120_06272 N 0.000
M437DRAFT_40207 Aureobasidium melanogenum M437DRAFT_40207 I 0.000
M438DRAFT_263079 Aureobasidium pullulans M438DRAFT_263079 I 0.000
MBM_09947 Marssonina brunnea MBM_09947 I 0.000
MGG_00329 Magnaporthe oryzae MGG_00329 N 0.000
MYCFIDRAFT_135462 Pseudocercospora fijiensis MYCFIDRAFT_135462 N 0.000
Mycgr3G11455 Zymoseptoria tritici Mycgr3G11455 N 0.000
MYCTH_2297073 Myceliophthora thermophila MYCTH_2297073 I 0.000
NCU07374 Neurospora crassa NCU07374 D 0.000
NechaG30594 Fusarium solani NechaG30594 I 0.000
NEUTE1DRAFT_125788 Neurospora tetrasperma NEUTE1DRAFT_125788 I 0.000
OIDMADRAFT_173784 Oidiodendron maius OIDMADRAFT_173784 I 0.000
OIDMADRAFT_173807 Oidiodendron maius OIDMADRAFT_173807 I 0.000
OIDMADRAFT_173839 Oidiodendron maius OIDMADRAFT_173839 I 0.000
OIDMADRAFT_208766 Oidiodendron maius OIDMADRAFT_208766 I 0.000
PODANS_2_150 Podospora anserina PODANS_2_150 I 0.000
PV04_01229 Capronia semiimmersa PV04_01229 N 0.000
S40285_00687 Stachybotrys chlorohalonata S40285_00687 I 0.000
SEPMUDRAFT_150506 Sphaerulina musiva SEPMUDRAFT_150506 N 0.000
SMAC_00325 Sordaria macrospora SMAC_00325 I 0.000
THITE_2112545 Thielavia terrestris THITE_2112545 I 0.000
VDAG_03199 Verticillium dahliae VDAG_03199 N 0.000
Z518_04103 Rhinocladiella mackenziei Z518_04103 N 0.000