Alligator_sinensis_CCG013281.1 (Alligator sinensis)
ARID/BRIGHT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF01388 (ARID) IPR001606 Alligator_sinensis_CCG013281.1 T015855_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Arid5a
M00116_2.00
Mus musculus
NHAATATTDNN

NNHAATATTDN
PBM
Badis et al.(2009)
Arid5a_3770
0.771 0.965
Arid5a
M01663_2.00
Rattus norvegicus
NNNRWATHNN

NNDATWYNNN
PBM
Weirauch et al.(2014)
pTH5121
0.771 0.965
arid6
M01657_2.00
Danio rerio
NNRWATYN

NRATWYNN
PBM
Weirauch et al.(2014)
pTH5120
0.663 0.659
Arid5b
M01661_2.00
Mus musculus
NDATWHNN

NNDWATHN
PBM
Weirauch et al.(2014)
pTH4426
0.646 0.765
ARID5B
M08707_2.00
Homo sapiens
DNBKDRTATTSKD

HMSAATAYHMVNH
Misc
Kulakovskiy et al.(2013)
ARI5B_HUMAN.H11MO.0.C
0.646 0.765
Arid5b
M08708_2.00
Mus musculus
DNBKDRTATTSKD

HMSAATAYHMVNH
Misc
Kulakovskiy et al.(2013)
ARI5B_MOUSE.H11MO.0.C
0.646 0.765
ARID5B
M09767_2.00
Homo sapiens
KBDGTATTGTRSWB

VWSYACAATACHVM
Transfac
Matys et al.(2006)
V$MRF2_01
0.646 0.765
e_gw.4.260.1_CONSTRUCT
M01668_2.00
PBM CONSTRUCTS
NNNDATHNNN

NNNDATHNNN
PBM
Weirauch et al.(2014)
pTH5122
0.506 0.600
For this family, TFs with SR scores > 0.422 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Alligator_sinensis_CCG013281.1 ARID/BRIGHT 120 205

Links

Other ARID/BRIGHT family TFs
Other Alligator sinensis TFs

152 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ENSAMEG00000019668 Ailuropoda melanoleuca ENSAMEG00000019668 N 0.000
ENSCSAG00000018910 Chlorocebus sabaeus ENSCSAG00000018910 N 0.000
ENSDORG00000005705 Dipodomys ordii ENSDORG00000005705 N 0.000
ENSMPUG00000019344 Mustela putorius furo ENSMPUG00000019344 N 0.000
ENSNLEG00000004569 Nomascus leucogenys ENSNLEG00000004569 N 0.000
ENSOARG00000015487 Ovis aries ENSOARG00000015487 N 0.000
ENSP00000372635 Macaca fascicularis ENSP00000372635 N 0.000
ENSP00000406955-D1 Bos grunniens ENSP00000406955-D1 N 0.000
ENSSSCG00000021674 Sus scrofa ENSSSCG00000021674 N 0.000
ENSSTOG00000025333 Ictidomys tridecemlineatus ENSSTOG00000025333 N 0.000
ENSTSYG00000009951 Tarsius syrichta ENSTSYG00000009951 N 0.000
Myotis_brandtii_ZBTB38_10028248 Myotis brandtii Myotis_brandtii_ZBTB38_10028248 N 0.000
ZBTB38 Pan troglodytes ENSPTRG00000030108 N 0.000
ZBTB38 Pteropus vampyrus ENSPVAG00000017499 N 0.000
Zbtb38 Rattus norvegicus ENSRNOG00000012386 N 0.000
ZBTB38 Sus scrofa ENSSSCG00000022073 N 0.000
ZBTB38 Vicugna pacos ENSVPAG00000007353 N 0.000
ZBTB38 Ochotona princeps ENSOPRG00000009539 N 0.000
ZBTB38 Otolemur garnettii ENSOGAG00000009394 N 0.000
ZBTB38 Callithrix jacchus ENSCJAG00000031471 N 0.000
ZBTB38 Erinaceus europaeus ENSEEUG00000000264 N 0.000
ZBTB38 Felis catus ENSFCAG00000030922 N 0.000
ZBTB38 Homo sapiens ENSG00000177311 N 0.000
ZBTB38 Gorilla gorilla ENSGGOG00000023008 N 0.000
ZBTB38 Myotis lucifugus ENSMLUG00000012512 N 0.000
ZBTB38 Macaca mulatta ENSMMUG00000031526 N 0.000
ZBTB38 Canis familiaris ENSCAFG00000007664 N 0.000
Zbtb38 Mus musculus ENSMUSG00000040433 N 0.000
ZBTB38 Bos taurus ENSBTAG00000040061 N 0.000
ZBTB38 Dasypus novemcinctus ENSDNOG00000037832 N 0.000