Hsal_01506--XP_395512.3_APIME (Harpegnathos saltator)
ARID/BRIGHT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF01388 (ARID) IPR001606 Hsal_01506--XP_395512.3_APIME T015908_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Arid5a
M00116_2.00
Mus musculus
NHAATATTDNN

NNHAATATTDN
PBM
Badis et al.(2009)
Arid5a_3770
0.553 0.523
Arid5a
M01663_2.00
Rattus norvegicus
NNNRWATHNN

NNDATWYNNN
PBM
Weirauch et al.(2014)
pTH5121
0.553 0.523
Arid5b
M01661_2.00
Mus musculus
NDATWHNN

NNDWATHN
PBM
Weirauch et al.(2014)
pTH4426
0.530 0.488
ARID5B
M08707_2.00
Homo sapiens
DNBKDRTATTSKD

HMSAATAYHMVNH
Misc
Kulakovskiy et al.(2013)
ARI5B_HUMAN.H11MO.0.C
0.530 0.488
Arid5b
M08708_2.00
Mus musculus
DNBKDRTATTSKD

HMSAATAYHMVNH
Misc
Kulakovskiy et al.(2013)
ARI5B_MOUSE.H11MO.0.C
0.530 0.488
ARID5B
M09767_2.00
Homo sapiens
KBDGTATTGTRSWB

VWSYACAATACHVM
Transfac
Matys et al.(2006)
V$MRF2_01
0.530 0.488
arid6
M01657_2.00
Danio rerio
NNRWATYN

NRATWYNN
PBM
Weirauch et al.(2014)
pTH5120
0.526 0.558
e_gw.4.260.1_CONSTRUCT
M01668_2.00
PBM CONSTRUCTS
NNNDATHNNN

NNNDATHNNN
PBM
Weirauch et al.(2014)
pTH5122
0.423 0.547
For this family, TFs with SR scores > 0.422 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Hsal_01506--XP_395512.3_APIME ARID/BRIGHT 226 312

Links

Other ARID/BRIGHT family TFs
Other Harpegnathos saltator TFs

147 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
gene22967-v1.0-hybrid Fragaria vesca gene22967-v1.0-hybrid I 0.000
evm.TU.contig_33457.2 Carica papaya evm.TU.contig_33457.2 I 0.000
evm.TU.contig_31147 Carica papaya evm.TU.contig_31147 I 0.000
evm.TU.contig_28448.4 Carica papaya evm.TU.contig_28448.4 I 0.000
evm.TU.contig_27586 Carica papaya evm.TU.contig_27586 I 0.000
evm.TU.contig_26058.2 Carica papaya evm.TU.contig_26058.2 I 0.000
evm.TU.contig_26058.1 Carica papaya evm.TU.contig_26058.1 I 0.000
evm.TU.contig_24608 Carica papaya evm.TU.contig_24608 I 0.000
Eucgr.E01737 Eucalyptus grandis Eucgr.E01737 I 0.000
Eucgr.E01736 Eucalyptus grandis Eucgr.E01736 I 0.000
Eucgr.E01733 Eucalyptus grandis Eucgr.E01733 I 0.000
Eucgr.B01824 Eucalyptus grandis Eucgr.B01824 I 0.000
Bostr.2392s0039 Boechera stricta Bostr.2392s0039 I 0.000
SapurV1A.0442s0180 Salix purpurea SapurV1A.0442s0180 I 0.000
Aquca_007_00647 Aquilegia coerulea Aquca_007_00647 I 0.000
SapurV1A.0442s0190 Salix purpurea SapurV1A.0442s0190 I 0.000
evm.TU.contig_35009 Carica papaya evm.TU.contig_35009 I 0.000
evm.TU.contig_36181 Carica papaya evm.TU.contig_36181 I 0.000
gene18029-v1.0-hybrid Fragaria vesca gene18029-v1.0-hybrid I 0.000
Gorai.004G292000 Gossypium raimondii Gorai.004G292000 I 0.000
evm.TU.supercontig_30.166 Carica papaya evm.TU.supercontig_30.166 I 0.000
SapurV1A.0066s0310 Salix purpurea SapurV1A.0066s0310 I 0.000
Lus10014578.g Linum usitatissimum Lus10014578.g I 0.000
evm.TU.supercontig_265.1 Carica papaya evm.TU.supercontig_265.1 I 0.000
evm.TU.supercontig_185.2 Carica papaya evm.TU.supercontig_185.2 I 0.000
evm.TU.supercontig_185.11 Carica papaya evm.TU.supercontig_185.11 I 0.000
evm.TU.supercontig_1750.2 Carica papaya evm.TU.supercontig_1750.2 I 0.000
Lus10032108.g Linum usitatissimum Lus10032108.g I 0.000
evm.TU.supercontig_1237.1 Carica papaya evm.TU.supercontig_1237.1 I 0.000
evm.TU.supercontig_117.19 Carica papaya evm.TU.supercontig_117.19 I 0.000
evm.TU.supercontig_117.18 Carica papaya evm.TU.supercontig_117.18 I 0.000
MDP0000846004 Malus domestica MDP0000846004 I 0.000
MDP0000925348 Malus domestica MDP0000925348 I 0.000
Thhalv10012000m.g Eutrema salsugineum Thhalv10012000m.g I 0.000
evm.TU.contig_40499.2 Carica papaya evm.TU.contig_40499.2 I 0.000
POPTR_0013s01880 Populus trichocarpa POPTR_0013s01880 I 0.000
POPTR_0013s00350 Populus trichocarpa POPTR_0013s00350 I 0.000
POPTR_0005s00420 Populus trichocarpa POPTR_0005s00420 I 0.000
chr6.LjT19B22.120.nd Lotus japonicus chr6.LjT19B22.120.nd I 0.000
MTR_3g065100 Medicago truncatula MTR_3g065100 I 0.000
Ca_06495 Cicer arietinum Ca_06495 I 0.000
GSMUA_Achr3G05500_001 Musa acuminata GSMUA_Achr3G05500_001 I 0.000
LjSGA_042497.2 Lotus japonicus LjSGA_042497.2 I 0.000
LjSGA_147985.1 Lotus japonicus LjSGA_147985.1 I 0.000
LjT40B16.70.nc Lotus japonicus LjT40B16.70.nc I 0.000
GLYMA18G04760 Glycine max GLYMA18G04760 I 0.000
GLYMA11G33460 Glycine max GLYMA11G33460 I 0.000
Bra029469 Brassica rapa Bra029469 I 0.000
Bra018490 Brassica rapa Bra018490 I 0.000
Bo9g078450 Brassica oleracea Bo9g078450 I 0.000
PRUPE_ppa018168mg Prunus persica PRUPE_ppa018168mg I 0.000
Thhalv10024119m.g Eutrema salsugineum Thhalv10024119m.g I 0.000
Solyc01g102260.2 Solanum lycopersicum Solyc01g102260.2 I 0.000
Thhalv10022373m.g Eutrema salsugineum Thhalv10022373m.g I 0.000
mgf026186m Mimulus guttatus mgf026186m I 0.000
Cucsa.050930 Cucumis sativus Cucsa.050930 I 0.000
cassava19828.m1 Manihot esculenta cassava19828.m1 I 0.000
cassava15247.m1 Manihot esculenta cassava15247.m1 I 0.000
30199.m000879 Ricinus communis 30199.m000879 I 0.000
Pm004396 Prunus mume Pm004396 I 0.000
Cla005226 Citrullus lanatus Cla005226 I 0.000
Ca_13275 Cicer arietinum Ca_13275 I 0.000
Ca_08934 Cicer arietinum Ca_08934 I 0.000
Thhalv10023873m.g Eutrema salsugineum Thhalv10023873m.g I 0.000
VIT_14s0060g00300 Vitis vinifera VIT_14s0060g00300 I 0.000
TCM_026842 Theobroma cacao TCM_026842 I 0.000
Al_scaffold_0003_569 Arabidopsis lyrata Al_scaffold_0003_569 I 0.000
evm.TU.supercontig_30.164 Carica papaya evm.TU.supercontig_30.164 N 0.000
PDK_20s1688321g001 Phoenix dactylifera PDK_20s1688321g001 N 0.000
Pavir.Ib03850 Panicum virgatum Pavir.Ib03850 N 0.000
evm.TU.supercontig_358.1 Carica papaya evm.TU.supercontig_358.1 N 0.000
GRMZM5G853066 Zea mays GRMZM5G853066 N 0.000
GSMUA_Achr2G18400_001 Musa acuminata GSMUA_Achr2G18400_001 N 0.000
GSMUA_Achr2G18410_001 Musa acuminata GSMUA_Achr2G18410_001 N 0.000
MTR_4g028800 Medicago truncatula MTR_4g028800 N 0.000
Si019470m.g Setaria italica Si019470m.g N 0.000
GSMUA_Achr3G08500_001 Musa acuminata GSMUA_Achr3G08500_001 N 0.000
Aquca_003_00269 Aquilegia coerulea Aquca_003_00269 N 0.000
Aquca_003_00271 Aquilegia coerulea Aquca_003_00271 N 0.000
Aquca_003_00272 Aquilegia coerulea Aquca_003_00272 N 0.000
Aquca_029_00010 Aquilegia coerulea Aquca_029_00010 N 0.000
evm.TU.contig_25253.2 Carica papaya evm.TU.contig_25253.2 N 0.000
evm.TU.contig_28448.1 Carica papaya evm.TU.contig_28448.1 N 0.000
evm.TU.contig_38760 Carica papaya evm.TU.contig_38760 N 0.000
Aquca_003_00270 Aquilegia coerulea Aquca_003_00270 N 0.000
evm.TU.supercontig_1256.1 Carica papaya evm.TU.supercontig_1256.1 N 0.000
evm.TU.supercontig_265.6 Carica papaya evm.TU.supercontig_265.6 N 0.000
GRMZM5G839969 Zea mays GRMZM5G839969 N 0.000