CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Hsal_01506--XP_395512.3_APIME
(
Harpegnathos saltator
)
ARID/BRIGHT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF01388 (ARID)
IPR001606
Hsal_01506--XP_395512.3_APIME
T015908_2.00
GigaDB (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Arid5a
M00116_2.00
Mus musculus
NHAATATTDNN
NNHAATATTDN
PBM
Badis et al.(2009)
Arid5a_3770
0.553
0.523
Arid5a
M01663_2.00
Rattus norvegicus
NNNRWATHNN
NNDATWYNNN
PBM
Weirauch et al.(2014)
pTH5121
0.553
0.523
Arid5b
M01661_2.00
Mus musculus
NDATWHNN
NNDWATHN
PBM
Weirauch et al.(2014)
pTH4426
0.530
0.488
ARID5B
M08707_2.00
Homo sapiens
DNBKDRTATTSKD
HMSAATAYHMVNH
Misc
Kulakovskiy et al.(2013)
ARI5B_HUMAN.H11MO.0.C
0.530
0.488
Arid5b
M08708_2.00
Mus musculus
DNBKDRTATTSKD
HMSAATAYHMVNH
Misc
Kulakovskiy et al.(2013)
ARI5B_MOUSE.H11MO.0.C
0.530
0.488
ARID5B
M09767_2.00
Homo sapiens
KBDGTATTGTRSWB
VWSYACAATACHVM
Transfac
Matys et al.(2006)
V$MRF2_01
0.530
0.488
arid6
M01657_2.00
Danio rerio
NNRWATYN
NRATWYNN
PBM
Weirauch et al.(2014)
pTH5120
0.526
0.558
e_gw.4.260.1_CONSTRUCT
M01668_2.00
PBM CONSTRUCTS
NNNDATHNNN
NNNDATHNNN
PBM
Weirauch et al.(2014)
pTH5122
0.423
0.547
For this family, TFs with SR scores >
0.422
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Hsal_01506--XP_395512.3_APIME
ARID/BRIGHT
226
312
EEKKFIIDVQGFMNSRGTPFGKMPLLGNKQIDLFLFYTKVQMLGGYDSVSTGRLWKTIYDDIGGSTTSTNAATTTRRHYERLLLPYE
Links
Other
ARID/BRIGHT
family TFs
Other
Harpegnathos saltator
TFs
147 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy