CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Myotis_brandtii_ARID5A_10013684
(
Myotis brandtii
)
ARID/BRIGHT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF01388 (ARID)
IPR001606
Myotis_brandtii_ARID5A_10013684
T015919_2.00
GigaDB (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Arid5a
M00116_2.00
Mus musculus
NHAATATTDNN
NNHAATATTDN
PBM
Badis et al.(2009)
Arid5a_3770
0.785
0.988
Arid5a
M01663_2.00
Rattus norvegicus
NNNRWATHNN
NNDATWYNNN
PBM
Weirauch et al.(2014)
pTH5121
0.785
0.988
arid6
M01657_2.00
Danio rerio
NNRWATYN
NRATWYNN
PBM
Weirauch et al.(2014)
pTH5120
0.649
0.647
Arid5b
M01661_2.00
Mus musculus
NDATWHNN
NNDWATHN
PBM
Weirauch et al.(2014)
pTH4426
0.632
0.753
ARID5B
M08707_2.00
Homo sapiens
DNBKDRTATTSKD
HMSAATAYHMVNH
Misc
Kulakovskiy et al.(2013)
ARI5B_HUMAN.H11MO.0.C
0.632
0.753
Arid5b
M08708_2.00
Mus musculus
DNBKDRTATTSKD
HMSAATAYHMVNH
Misc
Kulakovskiy et al.(2013)
ARI5B_MOUSE.H11MO.0.C
0.632
0.753
ARID5B
M09767_2.00
Homo sapiens
KBDGTATTGTRSWB
VWSYACAATACHVM
Transfac
Matys et al.(2006)
V$MRF2_01
0.632
0.753
e_gw.4.260.1_CONSTRUCT
M01668_2.00
PBM CONSTRUCTS
NNNDATHNNN
NNNDATHNNN
PBM
Weirauch et al.(2014)
pTH5122
0.493
0.600
For this family, TFs with SR scores >
0.422
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Myotis_brandtii_ARID5A_10013684
ARID/BRIGHT
68
153
EEQAFLVSLYKFMKERHTPIERVPHLGFKQINLWKIYKAVEKLGAYEMVTGRRLWKNVYDELGGSPGSTSAATCTRRHYERLVLPY
Links
Other
ARID/BRIGHT
family TFs
Other
Myotis brandtii
TFs
152 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy