CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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cassava23401.valid.m1
(
Manihot esculenta
)
ARID/BRIGHT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF01388 (ARID)
IPR001606
cassava23401.valid.m1
T015953_2.00
JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ARID3
M06695_2.00
Arabidopsis thaliana
AAWWHNAAATYAAWW
WWTTRATTTNDWWTT
Dap-seq
OMalley et al.(2016)
AT2G17410_col_a
0.724
0.882
ARID6
M06694_2.00
Arabidopsis thaliana
HAATTRAWTTN
NAAWTYAATTD
Dap-seq
OMalley et al.(2016)
AT1G20910_col_a
0.629
0.729
For this family, TFs with SR scores >
0.422
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
cassava23401.valid.m1
ARID/BRIGHT
430
515
EQWAFMKELENFFRERSMEFKPPKFYGEGLNCLKLWRAVMRLGGYDKVTSCKLWRQVGESFKPPKTCTTVSWTFRGFYEKALLDYE
Links
Other
ARID/BRIGHT
family TFs
Other
Manihot esculenta
TFs
154 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy