CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Sakowv30017861m.g
(
Saccoglossus kowalevskii
)
ARID/BRIGHT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF01388 (ARID)
IPR001606
Sakowv30017861m.g
T016043_2.00
JGI:Metazome (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
GSPATT00004674001
M01665_2.00
Paramecium tetraurelia
NNATYHNN
NNDRATNN
PBM
Weirauch et al.(2014)
pTH5124
0.503
0.400
TTHERM_00243900
M01666_2.00
Tetrahymena thermophila
NDDATYANN
NNTRATHHN
PBM
Weirauch et al.(2014)
pTH5128
0.503
0.365
Arid3b
M01659_2.00
Mus musculus
NNDATTAAWWN
NWWTTAATHNN
PBM
Weirauch et al.(2014)
pTH4425
0.481
0.471
ARID3A
M01662_2.00
Procavia capensis
NNATHDNNN
NNNHDATNN
PBM
Weirauch et al.(2014)
pTH9384
0.468
0.459
ARID3A
M01658_2.00
Microcebus murinus
NDATHAWDN
NHWTDATHN
PBM
Weirauch et al.(2014)
pTH9214
0.468
0.447
Arid3a
M00115_2.00
Mus musculus
NDATHADDN
NHHTDATHN
PBM
Badis et al.(2009)
Arid3a_3875
0.468
0.447
Arid3a
M01660_2.00
Mus musculus
NDATHAADN
NHTTDATHN
PBM
Weirauch et al.(2014)
pTH5169
0.468
0.447
Arid3a
M02651_2.00
Mus musculus
ATYAAA
TTTRAT
SELEX
Mathelier et al.(2014)
MA0151.1
0.468
0.447
ARID3A
M09766_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$DRI1_01
0.468
0.447
retn
M01664_2.00
Drosophila melanogaster
NDATHRNN
NNYDATHN
PBM
Weirauch et al.(2014)
pTH5119
0.467
0.447
retn
M03590_2.00
Drosophila melanogaster
NNATTRATHN
NDATYAATNN
SELEX
Nitta et al.(2015)
retn_1
0.467
0.447
retn
M05899_2.00
Drosophila melanogaster
AATYAAAM
KTTTRATT
B1H
Zhu et al.(2011)
retn_SANGER_5_FBgn0004795
0.467
0.447
retn
M09768_2.00
Drosophila melanogaster
NNRATTAADN
NHTTAATYNN
Transfac
Matys et al.(2006)
I$DRI_01
0.467
0.447
ACYPI009013
M01655_2.00
Acyrthosiphon pisum
NDATHAADN
NHTTDATHN
PBM
Weirauch et al.(2014)
pTH5117
0.467
0.424
cfi-1
M01667_2.00
Caenorhabditis elegans
NNATHDNN
NNHDATNN
PBM
Weirauch et al.(2014)
pTH5118
0.467
0.412
DDB_G0275333
M01656_2.00
Dictyostelium discoideum
NNATHDNNNN
NNNNHDATNN
PBM
Weirauch et al.(2014)
pTH5168
0.447
0.376
For this family, TFs with SR scores >
0.422
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
23955197_peptide
ARID/BRIGHT
1030
1115
ARAPFLDKLVKFLEDRGEPIKKCPMMSNTTLDLYKLYKCVKDKGGAAEVSRHKQWKDICAVMNIGSSNTAAFTLRKNYNKYLLSYE
23955198_peptide
ARID/BRIGHT
1030
1115
ARAPFLDKLVKFLEDRGEPIKKCPMMSNTTLDLYKLYKCVKDKGGAAEVSRHKQWKDICAVMNIGSSNTAAFTLRKNYNKYLLSYE
23955199_peptide
ARID/BRIGHT
989
1074
ARAPFLDKLVKFLEDRGEPIKKCPMMSNTTLDLYKLYKCVKDKGGAAEVSRHKQWKDICAVMNIGSSNTAAFTLRKNYNKYLLSYE
23955200_peptide
ARID/BRIGHT
960
1045
ARAPFLDKLVKFLEDRGEPIKKCPMMSNTTLDLYKLYKCVKDKGGAAEVSRHKQWKDICAVMNIGSSNTAAFTLRKNYNKYLLSYE
23955201_peptide
ARID/BRIGHT
914
999
ARAPFLDKLVKFLEDRGEPIKKCPMMSNTTLDLYKLYKCVKDKGGAAEVSRHKQWKDICAVMNIGSSNTAAFTLRKNYNKYLLSYE
23955202_peptide
ARID/BRIGHT
914
999
ARAPFLDKLVKFLEDRGEPIKKCPMMSNTTLDLYKLYKCVKDKGGAAEVSRHKQWKDICAVMNIGSSNTAAFTLRKNYNKYLLSYE
23955203_peptide
ARID/BRIGHT
873
958
ARAPFLDKLVKFLEDRGEPIKKCPMMSNTTLDLYKLYKCVKDKGGAAEVSRHKQWKDICAVMNIGSSNTAAFTLRKNYNKYLLSYE
23955204_peptide
ARID/BRIGHT
848
933
ARAPFLDKLVKFLEDRGEPIKKCPMMSNTTLDLYKLYKCVKDKGGAAEVSRHKQWKDICAVMNIGSSNTAAFTLRKNYNKYLLSYE
23955205_peptide
ARID/BRIGHT
777
862
ARAPFLDKLVKFLEDRGEPIKKCPMMSNTTLDLYKLYKCVKDKGGAAEVSRHKQWKDICAVMNIGSSNTAAFTLRKNYNKYLLSYE
23955206_peptide
ARID/BRIGHT
740
825
ARAPFLDKLVKFLEDRGEPIKKCPMMSNTTLDLYKLYKCVKDKGGAAEVSRHKQWKDICAVMNIGSSNTAAFTLRKNYNKYLLSYE
23955207_peptide
ARID/BRIGHT
452
537
ARAPFLDKLVKFLEDRGEPIKKCPMMSNTTLDLYKLYKCVKDKGGAAEVSRHKQWKDICAVMNIGSSNTAAFTLRKNYNKYLLSYE
23955208_peptide
ARID/BRIGHT
382
467
ARAPFLDKLVKFLEDRGEPIKKCPMMSNTTLDLYKLYKCVKDKGGAAEVSRHKQWKDICAVMNIGSSNTAAFTLRKNYNKYLLSYE
23955209_peptide
ARID/BRIGHT
1030
1115
ARAPFLDKLVKFLEDRGEPIKKCPMMSNTTLDLYKLYKCVKDKGGAAEVSRHKQWKDICAVMNIGSSNTAAFTLRKNYNKYLLSYE
23955210_peptide
ARID/BRIGHT
94
179
ARAPFLDKLVKFLEDRGEPIKKCPMMSNTTLDLYKLYKCVKDKGGAAEVSRHKQWKDICAVMNIGSSNTAAFTLRKNYNKYLLSYE
Links
Other
ARID/BRIGHT
family TFs
Other
Saccoglossus kowalevskii
TFs
411 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy