Cagra.6160s0006 (Capsella grandiflora)
ARID/BRIGHT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF01388 (ARID) IPR001606 Cagra.6160s0006 T016068_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ARID6
M06694_2.00
Arabidopsis thaliana
HAATTRAWTTN

NAAWTYAATTD
Dap-seq
OMalley et al.(2016)
AT1G20910_col_a
0.748 0.835
ARID3
M06695_2.00
Arabidopsis thaliana
AAWWHNAAATYAAWW

WWTTRATTTNDWWTT
Dap-seq
OMalley et al.(2016)
AT2G17410_col_a
0.578 0.729
For this family, TFs with SR scores > 0.422 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.6160s0006.1.p ARID/BRIGHT 120 205

Links

Other ARID/BRIGHT family TFs
Other Capsella grandiflora TFs

157 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Carubv10009301m.g Capsella rubella Carubv10009301m.g I 0.785
Bostr.7128s0681 Boechera stricta Bostr.7128s0681 I 0.762
fgenesh2_kg.1__2281__AT1G20910.1 Arabidopsis lyrata fgenesh2_kg.1__2281__AT1G20910.1 I 0.748
ARID6 Arabidopsis thaliana AT1G20910 D 0.748
Thhalv10007750m.g Eutrema salsugineum Thhalv10007750m.g I 0.748
Bo7g061260 Brassica oleracea Bo7g061260 I 0.711
Bra012257 Brassica rapa Bra012257 I 0.711
Bo8g070520 Brassica oleracea Bo8g070520 I 0.675
Bra016443 Brassica rapa Bra016443 I 0.675
Bo5g030830 Brassica oleracea Bo5g030830 I 0.675
Bra025855 Brassica rapa Bra025855 I 0.675
PK02181.1 Cannabis sativa PK02181.1 I 0.672
fgenesh2_kg.2__1939__AT1G76510.1 Arabidopsis lyrata fgenesh2_kg.2__1939__AT1G76510.1 I 0.672
Carubv10020299m.g Capsella rubella Carubv10020299m.g I 0.672
Bostr.20129s0090 Boechera stricta Bostr.20129s0090 I 0.672
AT1G76510 Arabidopsis thaliana AT1G76510 I 0.672
Cagra.2281s0033 Capsella grandiflora Cagra.2281s0033 I 0.672
Pm022898 Prunus mume Pm022898 I 0.672
evm.TU.supercontig_26.2 Carica papaya evm.TU.supercontig_26.2 I 0.672
PRUPE_ppa006712mg Prunus persica PRUPE_ppa006712mg I 0.672
Thhalv10018578m.g Eutrema salsugineum Thhalv10018578m.g I 0.672
30170.m013806 Ricinus communis 30170.m013806 I 0.659
POPTR_0002s00550 Populus trichocarpa POPTR_0002s00550 I 0.659
PGSC0003DMG400010001 Solanum tuberosum PGSC0003DMG400010001 I 0.659
VIT_18s0122g00560 Vitis vinifera VIT_18s0122g00560 I 0.659
cassava27165.m1 Manihot esculenta cassava27165.m1 I 0.659
TCM_034809 Theobroma cacao TCM_034809 I 0.659
Ca_04797 Cicer arietinum Ca_04797 I 0.659
Eucgr.F01815 Eucalyptus grandis Eucgr.F01815 I 0.659
SapurV1A.0016s0160 Salix purpurea SapurV1A.0016s0160 I 0.659
SapurV1A.0554s0250 Salix purpurea SapurV1A.0554s0250 I 0.659
chr1.CM0150.370.nc Lotus japonicus chr1.CM0150.370.nc I 0.659
orange1.1g012780m.g Citrus sinensis orange1.1g012780m.g I 0.659
Gorai.002G112400 Gossypium raimondii Gorai.002G112400 I 0.659
mgf002691m Mimulus guttatus mgf002691m I 0.659
Ciclev10001099m.g Citrus clementina Ciclev10001099m.g I 0.659
MTR_3g116200 Medicago truncatula MTR_3g116200 I 0.659
mgf001698m Mimulus guttatus mgf001698m I 0.659
Solyc04g082820.2 Solanum lycopersicum Solyc04g082820.2 I 0.659
GLYMA06G01640 Glycine max GLYMA06G01640 I 0.659
GLYMA04G01560 Glycine max GLYMA04G01560 I 0.659
Bo6g120610 Brassica oleracea Bo6g120610 I 0.654
mgf014392m Mimulus guttatus mgf014392m I 0.630
mg023226m Mimulus guttatus mg023226m I 0.630
Pm020703 Prunus mume Pm020703 I 0.629
PRUPE_ppa001071mg Prunus persica PRUPE_ppa001071mg I 0.629
30162.m001290 Ricinus communis 30162.m001290 I 0.629
MDP0000890776 Malus domestica MDP0000890776 I 0.629
Eucgr.I01546 Eucalyptus grandis Eucgr.I01546 I 0.621
mgf005009m Mimulus guttatus mgf005009m I 0.619
GRMZM2G180654 Zea mays GRMZM2G180654 I 0.615
VIT_04s0044g01840 Vitis vinifera VIT_04s0044g01840 I 0.615
GRMZM5G883993 Zea mays GRMZM5G883993 I 0.615
Cucsa.323280 Cucumis sativus Cucsa.323280 I 0.615
GLYMA09G32820 Glycine max GLYMA09G32820 I 0.615
GLYMA11G09370 Glycine max GLYMA11G09370 I 0.615
Pm026967 Prunus mume Pm026967 I 0.615
Cla009111 Citrullus lanatus Cla009111 I 0.615
cassava23401.valid.m1 Manihot esculenta cassava23401.valid.m1 I 0.615
Ca_10698 Cicer arietinum Ca_10698 I 0.615
cassava24840.valid.m1 Manihot esculenta cassava24840.valid.m1 I 0.615
GLYMA01G36040 Glycine max GLYMA01G36040 I 0.615
orange1.1g004663m.g Citrus sinensis orange1.1g004663m.g I 0.615
MDP0000834789 Malus domestica MDP0000834789 I 0.615
orange1.1g009744m.g Citrus sinensis orange1.1g009744m.g I 0.615
Pavir.Db00824 Panicum virgatum Pavir.Db00824 I 0.615
PK12537.1 Cannabis sativa PK12537.1 I 0.615
BGIOSGA023283 Oryza indica BGIOSGA023283 I 0.615
MDP0000188323 Malus domestica MDP0000188323 I 0.615
Lus10022981.g Linum usitatissimum Lus10022981.g I 0.615
Ciclev10030351m.g Citrus clementina Ciclev10030351m.g I 0.615
Ciclev10025351m.g Citrus clementina Ciclev10025351m.g I 0.615
Eucgr.I02198 Eucalyptus grandis Eucgr.I02198 I 0.615
Gorai.003G000800 Gossypium raimondii Gorai.003G000800 I 0.615
Lus10001618.g Linum usitatissimum Lus10001618.g I 0.615
Gorai.012G137700 Gossypium raimondii Gorai.012G137700 I 0.615
TCM_007605 Theobroma cacao TCM_007605 I 0.615
29682.m000576 Ricinus communis 29682.m000576 I 0.615
Si006372m.g Setaria italica Si006372m.g I 0.615
Sb10g024400 Sorghum bicolor Sb10g024400 I 0.615
PRUPE_ppa003469mg Prunus persica PRUPE_ppa003469mg I 0.615
OS06G0622300 Oryza sativa OS06G0622300 I 0.615
MTR_5g024920 Medicago truncatula MTR_5g024920 I 0.615
OB06G29250 Oryza brachyantha OB06G29250 I 0.615
POPTR_0004s21870 Populus trichocarpa POPTR_0004s21870 I 0.615
Lus10016045.g Linum usitatissimum Lus10016045.g I 0.612
LPERR02G24480 Leersia perrieri LPERR02G24480 I 0.609
BRADI1G55550 Brachypodium distachyon BRADI1G55550 I 0.607
OMERI02G28920 Oryza meridionalis OMERI02G28920 I 0.595
OGLUM02G30740 Oryza glumaepatula OGLUM02G30740 I 0.595
OBART02G30070 Oryza barthii OBART02G30070 I 0.595
OS02G0714300 Oryza sativa OS02G0714300 I 0.595
AMTR_s00022p00128600 Amborella trichopoda AMTR_s00022p00128600 I 0.595
ORGLA02G0256100 Oryza glaberrima ORGLA02G0256100 I 0.595
F775_06069 Aegilops tauschii F775_06069 I 0.595
ORUFI02G31730 Oryza rufipogon ORUFI02G31730 I 0.595
BRADI3G53270 Brachypodium distachyon BRADI3G53270 I 0.595
Aquca_007_00955 Aquilegia coerulea Aquca_007_00955 I 0.595
OPUNC02G27630 Oryza punctata OPUNC02G27630 I 0.595
ONIVA02G32840 Oryza nivara ONIVA02G32840 I 0.595
Pavir.Aa00633 Panicum virgatum Pavir.Aa00633 I 0.595
Traes_6BL_936B5B999 Triticum aestivum Traes_6BL_936B5B999 I 0.595
Traes_6DL_E6E385C31 Triticum aestivum Traes_6DL_E6E385C31 I 0.595
Traes_6AL_D304A3C3B Triticum aestivum Traes_6AL_D304A3C3B I 0.595
BGIOSGA005739 Oryza indica BGIOSGA005739 I 0.595
PDK_20s1326081g004 Phoenix dactylifera PDK_20s1326081g004 I 0.595
TRIUR3_34317 Triticum urartu TRIUR3_34317 I 0.595
Si017073m.g Setaria italica Si017073m.g I 0.595
GRMZM2G110109 Zea mays GRMZM2G110109 I 0.595
Sb04g029990 Sorghum bicolor Sb04g029990 I 0.595
OB02G37240 Oryza brachyantha OB02G37240 I 0.595
Pavir.Ab03084 Panicum virgatum Pavir.Ab03084 I 0.595
GRMZM2G421899 Zea mays GRMZM2G421899 I 0.595
GLYMA16G21840 Glycine max GLYMA16G21840 I 0.583
ARID3 Arabidopsis thaliana AT2G17410 D 0.578
fgenesh2_kg.3__3325__AT2G17410.1 Arabidopsis lyrata fgenesh2_kg.3__3325__AT2G17410.1 I 0.578
gene17116-v1.0-hybrid Fragaria vesca gene17116-v1.0-hybrid I 0.578
Bo9g024490 Brassica oleracea Bo9g024490 I 0.578
Bra037275 Brassica rapa Bra037275 I 0.578
Thhalv10022553m.g Eutrema salsugineum Thhalv10022553m.g I 0.578
Cagra.6788s0003 Capsella grandiflora Cagra.6788s0003 I 0.578
GSMUA_AchrUn_randomG12940_001 Musa acuminata GSMUA_AchrUn_randomG12940_001 I 0.578
Carubv10012979m.g Capsella rubella Carubv10012979m.g I 0.578
Traes_2DL_C465ACBE4 Triticum aestivum Traes_2DL_C465ACBE4 I 0.578
Bostr.18351s0201 Boechera stricta Bostr.18351s0201 I 0.578
Traes_2BS_B3411790F Triticum aestivum Traes_2BS_B3411790F I 0.578
Traes_2AS_49D6010DA1 Triticum aestivum Traes_2AS_49D6010DA1 I 0.578
PDK_20s1315201g001 Phoenix dactylifera PDK_20s1315201g001 I 0.575
SELMODRAFT_445202 Selaginella moellendorffii SELMODRAFT_445202 I 0.573
SELMODRAFT_271464 Selaginella moellendorffii SELMODRAFT_271464 I 0.573
PGSC0003DMG400021771 Solanum tuberosum PGSC0003DMG400021771 I 0.571
Bra002058 Brassica rapa Bra002058 I 0.570
e_gw1.66.61.1 Physcomitrella patens e_gw1.66.61.1 I 0.569
OGLUM06G22430 Oryza glumaepatula OGLUM06G22430 I 0.565
OLONG_022248 Oryza longistaminata OLONG_022248 I 0.565
OBART06G21220 Oryza barthii OBART06G21220 I 0.565
ONIVA06G25180 Oryza nivara ONIVA06G25180 I 0.565
ORUFI06G22870 Oryza rufipogon ORUFI06G22870 I 0.565
OMERI01G31330 Oryza meridionalis OMERI01G31330 I 0.565
gene12982-v1.0-hybrid Fragaria vesca gene12982-v1.0-hybrid I 0.560
SapurV1A.0047s0480 Salix purpurea SapurV1A.0047s0480 I 0.560
POPTR_0011s14850 Populus trichocarpa POPTR_0011s14850 I 0.560
GSMUA_Achr4G19240_001 Musa acuminata GSMUA_Achr4G19240_001 I 0.548
Solyc12g094730.1 Solanum lycopersicum Solyc12g094730.1 I 0.538
gw1.131.40.1 Physcomitrella patens gw1.131.40.1 I 0.529
POPTR_0001s46070 Populus trichocarpa POPTR_0001s46070 I 0.525
SapurV1A.0478s0090 Salix purpurea SapurV1A.0478s0090 I 0.525
GLYMA05G10756 Glycine max GLYMA05G10756 I 0.503
GSMUA_Achr3G11660_001 Musa acuminata GSMUA_Achr3G11660_001 I 0.487
Bo7g014510 Brassica oleracea Bo7g014510 I 0.462
SMAR006121 Strigamia maritima SMAR006121 I 0.441
ISCW014189 Ixodes scapularis ISCW014189 I 0.441
LPERR06G17780 Leersia perrieri LPERR06G17780 I 0.439
SMAR003184 Strigamia maritima SMAR003184 I 0.430
GL50803_17540 Giardia lamblia GL50803_17540 I 0.430
OPUNC06G19340 Oryza punctata OPUNC06G19340 I 0.426
IGS.gm_25_00027 Chlorella NC64A IGS.gm_25_00027 N 0.425