Carubv10012979m.g (Capsella rubella)
ARID/BRIGHT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF01388 (ARID) IPR001606 Carubv10012979m.g T016071_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ARID3
M06695_2.00
Arabidopsis thaliana
AAWWHNAAATYAAWW

WWTTRATTTNDWWTT
Dap-seq
OMalley et al.(2016)
AT2G17410_col_a
0.785 0.988
ARID6
M06694_2.00
Arabidopsis thaliana
HAATTRAWTTN

NAAWTYAATTD
Dap-seq
OMalley et al.(2016)
AT1G20910_col_a
0.591 0.729
For this family, TFs with SR scores > 0.422 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10012979m ARID/BRIGHT 542 627

Links

Other ARID/BRIGHT family TFs
Other Capsella rubella TFs

154 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
chr4.CM0234.40.nc Lotus japonicus chr4.CM0234.40.nc N 0.000
Gorai.010G062800 Gossypium raimondii Gorai.010G062800 N 0.000
Gorai.009G016600 Gossypium raimondii Gorai.009G016600 N 0.000
Gorai.006G101100 Gossypium raimondii Gorai.006G101100 N 0.000
gene31058-v1.0-hybrid Fragaria vesca gene31058-v1.0-hybrid N 0.000
evm.TU.supercontig_10.263 Carica papaya evm.TU.supercontig_10.263 N 0.000
Ciclev10025929m.g Citrus clementina Ciclev10025929m.g N 0.000
Ciclev10010753m.g Citrus clementina Ciclev10010753m.g N 0.000
Carubv10009517m.g Capsella rubella Carubv10009517m.g N 0.000
Cagra.2238s0088 Capsella grandiflora Cagra.2238s0088 N 0.000
Bostr.7128s0147 Boechera stricta Bostr.7128s0147 N 0.000
Aquca_020_00103 Aquilegia coerulea Aquca_020_00103 N 0.000
Cucsa.132180 Cucumis sativus Cucsa.132180 N 0.000
Cucsa.105420 Cucumis sativus Cucsa.105420 N 0.000
Cucsa.096390 Cucumis sativus Cucsa.096390 N 0.000
cassava6704.valid.m1 Manihot esculenta cassava6704.valid.m1 N 0.000
Gorai.011G083900 Gossypium raimondii Gorai.011G083900 N 0.000
Lus10002168.g Linum usitatissimum Lus10002168.g N 0.000
Lus10019406.g Linum usitatissimum Lus10019406.g N 0.000
chr3.CM0142.530.nd Lotus japonicus chr3.CM0142.530.nd N 0.000
PK24888.1 Cannabis sativa PK24888.1 N 0.000
PK04144.1 Cannabis sativa PK04144.1 N 0.000
Thhalv10007967m.g Eutrema salsugineum Thhalv10007967m.g N 0.000
SapurV1A.1100s0070 Salix purpurea SapurV1A.1100s0070 N 0.000
SapurV1A.0034s0480 Salix purpurea SapurV1A.0034s0480 N 0.000
orange1.1g022816m.g Citrus sinensis orange1.1g022816m.g N 0.000
orange1.1g022412m.g Citrus sinensis orange1.1g022412m.g N 0.000
MDP0000574053 Malus domestica MDP0000574053 N 0.000
MDP0000375866 Malus domestica MDP0000375866 N 0.000
MDP0000301302 Malus domestica MDP0000301302 N 0.000
MDP0000248422 Malus domestica MDP0000248422 N 0.000
MDP0000152128 Malus domestica MDP0000152128 N 0.000
Lus10043263.g Linum usitatissimum Lus10043263.g N 0.000
Lus10030108.g Linum usitatissimum Lus10030108.g N 0.000
cassava5958.m1 Manihot esculenta cassava5958.m1 N 0.000
cassava13513.valid.m1 Manihot esculenta cassava13513.valid.m1 N 0.000
cassava13512.valid.m1 Manihot esculenta cassava13512.valid.m1 N 0.000
MTR_4g114785 Medicago truncatula MTR_4g114785 N 0.000
MTR_4g114770 Medicago truncatula MTR_4g114770 N 0.000
MTR_0339s0020 Medicago truncatula MTR_0339s0020 N 0.000
MTR_0339s0010 Medicago truncatula MTR_0339s0010 N 0.000
GLYMA15G01040 Glycine max GLYMA15G01040 N 0.000
GLYMA13G44230 Glycine max GLYMA13G44230 N 0.000
GLYMA06G30590 Glycine max GLYMA06G30590 N 0.000
GLYMA06G30350 Glycine max GLYMA06G30350 N 0.000
GLYMA06G25310 Glycine max GLYMA06G25310 N 0.000
GLYMA04G23980 Glycine max GLYMA04G23980 N 0.000
MBD10 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1001305 N 0.000
Bra016665 Brassica rapa Bra016665 N 0.000
Bo8g066360 Brassica oleracea Bo8g066360 N 0.000
MBD11 Arabidopsis thaliana AT3G15790 N 0.000
MBD10 Arabidopsis thaliana AT1G15340 N 0.000
PGSC0003DMG400002913 Solanum tuberosum PGSC0003DMG400002913 N 0.000
POPTR_0018s12980 Populus trichocarpa POPTR_0018s12980 N 0.000
PRUPE_ppa008789mg Prunus persica PRUPE_ppa008789mg N 0.000
29841.m002855 Ricinus communis 29841.m002855 N 0.000
Pm027560 Prunus mume Pm027560 N 0.000
Cla016961 Citrullus lanatus Cla016961 N 0.000
Cla012920 Citrullus lanatus Cla012920 N 0.000
Ca_19192 Cicer arietinum Ca_19192 N 0.000
Ca_06682 Cicer arietinum Ca_06682 N 0.000
VIT_11s0016g05580 Vitis vinifera VIT_11s0016g05580 N 0.000
VIT_09s0002g06870 Vitis vinifera VIT_09s0002g06870 N 0.000
TCM_038107 Theobroma cacao TCM_038107 N 0.000
TCM_027169 Theobroma cacao TCM_027169 N 0.000
Solyc12g009590.1 Solanum lycopersicum Solyc12g009590.1 N 0.000
Solyc07g008170.2 Solanum lycopersicum Solyc07g008170.2 N 0.000
Solyc06g068140.2 Solanum lycopersicum Solyc06g068140.2 N 0.000
MBD11 Arabidopsis lyrata scaffold_301848.1 N 0.000
PRUPE_ppa009989mg Prunus persica PRUPE_ppa009989mg N 0.000
AMTR_s00004p00169140 Amborella trichopoda AMTR_s00004p00169140 N 0.000