MDP0000198823 (Malus domestica)
ARID/BRIGHT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF01388 (ARID) IPR001606 MDP0000198823 T016142_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
retn
M01664_2.00 		Drosophila melanogaster
NDATHRNN
NNYDATHN		 PBM
Weirauch et al.(2014)
pTH5119 		0.440 0.342
retn
M03590_2.00 		Drosophila melanogaster
NNATTRATHN
NDATYAATNN		 SELEX
Nitta et al.(2015)
retn_1 		0.440 0.342
retn
M05899_2.00 		Drosophila melanogaster
AATYAAAM
KTTTRATT		 B1H
Zhu et al.(2011)
retn_SANGER_5_FBgn0004795 		0.440 0.342
retn
M09768_2.00 		Drosophila melanogaster
NNRATTAADN
NHTTAATYNN		 Transfac
Matys et al.(2006)
I$DRI_01 		0.440 0.342
ACYPI009013
M01655_2.00 		Acyrthosiphon pisum
NDATHAADN
NHTTDATHN		 PBM
Weirauch et al.(2014)
pTH5117 		0.440 0.316
For this family, TFs with SR scores > 0.422 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
MDP0000198823 ARID/BRIGHT 63 178

Links

Other ARID/BRIGHT family TFs
Other Malus domestica TFs

109 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
SapurV1A.0338s0260 Salix purpurea SapurV1A.0338s0260 I 0.565
orange1.1g029808m.g Citrus sinensis orange1.1g029808m.g I 0.541
Cla007529 Citrullus lanatus Cla007529 I 0.482
Cla016376 Citrullus lanatus Cla016376 I 0.480
Bostr.6758s0010 Boechera stricta Bostr.6758s0010 N 0.479
MESCA007536 Megaselia scalaris MESCA007536 I 0.477
H311_02283 Anncaliia algerae H311_02283 I 0.472
orange1.1g020305m.g Citrus sinensis orange1.1g020305m.g I 0.471
chr5.CM0260.670.nd Lotus japonicus chr5.CM0260.670.nd N 0.468
ACEP22600 Atta cephalotes ACEP22600 I 0.463
LDEC015171 Leptinotarsa decemlineata LDEC015171 I 0.463
Cflo_09201--XP_001121514.1_APIME Camponotus floridanus Cflo_09201--XP_001121514.1_APIME I 0.463
HMEL016284 Heliconius melpomene HMEL016284 I 0.463
L798_02230 Zootermopsis nevadensis L798_02230 I 0.463
YQE_12654 Dendroctonus ponderosae YQE_12654 I 0.463
Hsal_11119--XP_001121514.1_APIME Harpegnathos saltator Hsal_11119--XP_001121514.1_APIME I 0.463
estExt_fgenesh1_pg.C_10228 Coccomyxa subellipsoidea C169 estExt_fgenesh1_pg.C_10228 I 0.463
AMEC012114 Anopheles melas AMEC012114 I 0.463
BGIBMGA004104 Bombyx mori BGIBMGA004104 I 0.463
GG.C169_S01_00460 Chlorella vulgaris GG.C169_S01_00460 I 0.463
AATE005121 Anopheles atroparvus AATE005121 I 0.463
ACYPI34395 Acyrthosiphon pisum ACYPI34395 I 0.463
ASIS004112 Anopheles sinensis ASIS004112 I 0.463
CMM307C Cyanidioschyzon merolae CMM307C I 0.458
ENSOANG00000010382 Ornithorhynchus anatinus ENSOANG00000010382 I 0.452
MESCA001314 Megaselia scalaris MESCA001314 I 0.449
ENSDNOG00000042496 Dasypus novemcinctus ENSDNOG00000042496 I 0.444
TRE_0000223901 Trichobilharzia regenti TRE_0000223901 I 0.442
D915_07576 Fasciola hepatica D915_07576 I 0.442
SCUD_0001335501 Schistosoma curassoni SCUD_0001335501 I 0.442
Sjc_0028570 Schistosoma japonicum Sjc_0028570 I 0.442
MLOC_42821 Hordeum vulgare MLOC_42821 I 0.441
GK23065 Drosophila willistoni FBgn0225027 I 0.440
GI19027 Drosophila mojavensis FBgn0141766 I 0.440
GM16032 Drosophila sechellia FBgn0170948 I 0.440
GB55596 Apis mellifera GB55596 I 0.440
GD11780 Drosophila simulans FBgn0183519 I 0.440
GJ19993 Drosophila virilis FBgn0207134 I 0.440
GL16874 Drosophila persimilis FBgn0154478 I 0.440
TC008720 Tribolium castaneum TC008720 I 0.440
GH20664 Drosophila grimshawi FBgn0128127 I 0.440
ACOM035192 Anopheles coluzzii ACOM035192 I 0.440
AMEM013811 Anopheles merus AMEM013811 I 0.440
MDOA006752 Musca domestica MDOA006752 I 0.440
NV17632 Nasonia vitripennis NV17632 I 0.440
KGM_11440 Danaus plexippus KGM_11440 I 0.440
GE14310 Drosophila yakuba FBgn0231925 I 0.440
ACYPI34394 Acyrthosiphon pisum ACYPI34394 I 0.440
AGAP005156 Anopheles gambiae AGAP005156 I 0.440
GG22872 Drosophila erecta FBgn0115029 I 0.440
ACYPI009013 Acyrthosiphon pisum ACYPI009013 D 0.440
DAPPUDRAFT_3993 Daphnia pulex DAPPUDRAFT_3993 I 0.440
retn Drosophila melanogaster FBgn0004795 D 0.440
GA18855 Drosophila pseudoobscura FBgn0078855 I 0.440
GF13069 Drosophila ananassae FBgn0090102 I 0.440
HHAL000963-PA Halyomorpha halys HHAL000963-PA I 0.439
NEMVEDRAFT_v1g91926 Nematostella vectensis NEMVEDRAFT_v1g91926 I 0.434
tetur09g05800 Tetranychus urticae tetur09g05800 I 0.433
SNAPOd2T00025801001 Oikopleura dioica SNAPOd2T00025801001 I 0.433
SSLN_0000532101 Schistocephalus solidus SSLN_0000532101 I 0.433
Arid3c Dipodomys ordii ENSDORG00000001723 I 0.429
ARID3C Felis catus ENSFCAG00000003156 I 0.429
ARID3C Gorilla gorilla ENSGGOG00000002920 I 0.429
ENSMICG00000002379 Microcebus murinus ENSMICG00000002379 I 0.429
ARID3C Homo sapiens ENSG00000205143 I 0.429
ARID3C Callithrix jacchus ENSCJAG00000008754 I 0.429
ARID3C Canis familiaris ENSCAFG00000024873 I 0.429
ARID3C Bos taurus ENSBTAG00000025792 I 0.429
ENSAMEG00000014585 Ailuropoda melanoleuca ENSAMEG00000014585 I 0.429
ARID3C Choloepus hoffmanni ENSCHOG00000011584 I 0.429
ARID3C Macaca mulatta ENSMMUG00000020786 I 0.429
ENSCSAG00000010149 Chlorocebus sabaeus ENSCSAG00000010149 I 0.429
ARID3C Cavia porcellus ENSCPOG00000001541 I 0.429
ARID3C Dasypus novemcinctus ENSDNOG00000030859 I 0.429
ARID3C Loxodonta africana ENSLAFG00000017911 I 0.429
ENSPPYG00000020014 Pongo abelii ENSPPYG00000020014 I 0.429
ENSPANG00000025316 Papio anubis ENSPANG00000025316 I 0.429
ARID3C Otolemur garnettii ENSOGAG00000008253 I 0.429
ARID3C Pan troglodytes ENSPTRG00000029286 I 0.429
ARID3C Sus scrofa ENSSSCG00000010971 I 0.429
Arid3c Rattus norvegicus ENSRNOG00000013416 I 0.429
HelroG64754 Helobdella robusta HelroG64754 I 0.429
ARID3C Pteropus vampyrus ENSPVAG00000014819 I 0.429
ENSSTOG00000002820 Ictidomys tridecemlineatus ENSSTOG00000002820 I 0.429
ARID3C Ochotona princeps ENSOPRG00000009210 I 0.429
ARID3C Tursiops truncatus ENSTTRG00000005673 I 0.429
ARID3C Oryctolagus cuniculus ENSOCUG00000000361 I 0.429
Arid3c Mus musculus ENSMUSG00000066224 I 0.429
ENSOARG00000009192 Ovis aries ENSOARG00000009192 I 0.429
ENSMPUG00000004275 Mustela putorius furo ENSMPUG00000004275 I 0.429
ENSP00000368189 Macaca fascicularis ENSP00000368189 I 0.429
ARID3C Tupaia belangeri ENSTBEG00000004554 I 0.429
ENSNLEG00000004860 Nomascus leucogenys ENSNLEG00000004860 I 0.429
Ocbimv22026349m.g Octopus bimaculoides Ocbimv22026349m.g I 0.428
HelroG126316 Helobdella robusta HelroG126316 I 0.428
ASTEI08266 Anopheles stephensi ASTEI08266 I 0.427
CpipJ_CPIJ014252 Culex pipiens CpipJ_CPIJ014252 I 0.427
CPIJ014252 Culex quinquefasciatus CPIJ014252 I 0.427
PPAI000162 Phlebotomus papatasi PPAI000162 I 0.427
ADIR001538 Anopheles dirus ADIR001538 I 0.427
AALB004881 Anopheles albimanus AALB004881 I 0.427
SINV18993 Solenopsis invicta SINV18993 I 0.427
LCUP005990 Lucilia cuprina LCUP005990 I 0.427
AQUA009961 Anopheles quadriannulatus AQUA009961 I 0.427
ADIR003833 Anopheles dirus ADIR003833 I 0.427
AMIN007318 Anopheles minimus AMIN007318 I 0.427
AFUN000671 Anopheles funestus AFUN000671 I 0.427
AEPI010676 Anopheles epiroticus AEPI010676 I 0.427
EFA85631.1 Polysphondylium pallidum EFA85631.1 I 0.424