orange1.1g029808m.g (Citrus sinensis)
ARID/BRIGHT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF01388 (ARID) IPR001606 orange1.1g029808m.g T016160_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
retn
M01664_2.00
Drosophila melanogaster
NDATHRNN

NNYDATHN
PBM
Weirauch et al.(2014)
pTH5119
0.446 0.353
retn
M03590_2.00
Drosophila melanogaster
NNATTRATHN

NDATYAATNN
SELEX
Nitta et al.(2015)
retn_1
0.446 0.353
retn
M05899_2.00
Drosophila melanogaster
AATYAAAM

KTTTRATT
B1H
Zhu et al.(2011)
retn_SANGER_5_FBgn0004795
0.446 0.353
retn
M09768_2.00
Drosophila melanogaster
NNRATTAADN

NHTTAATYNN
Transfac
Matys et al.(2006)
I$DRI_01
0.446 0.353
DDB_G0275333
M01656_2.00
Dictyostelium discoideum
NNATHDNNNN

NNNNHDATNN
PBM
Weirauch et al.(2014)
pTH5168
0.446 0.341
ACYPI009013
M01655_2.00
Acyrthosiphon pisum
NDATHAADN

NHTTDATHN
PBM
Weirauch et al.(2014)
pTH5117
0.446 0.329
GSPATT00004674001
M01665_2.00
Paramecium tetraurelia
NNATYHNN

NNDRATNN
PBM
Weirauch et al.(2014)
pTH5124
0.443 0.412
ARID3A
M01658_2.00
Microcebus murinus
NDATHAWDN

NHWTDATHN
PBM
Weirauch et al.(2014)
pTH9214
0.432 0.388
Arid3a
M00115_2.00
Mus musculus
NDATHADDN

NHHTDATHN
PBM
Badis et al.(2009)
Arid3a_3875
0.432 0.388
Arid3a
M01660_2.00
Mus musculus
NDATHAADN

NHTTDATHN
PBM
Weirauch et al.(2014)
pTH5169
0.432 0.388
ARID3A
M01662_2.00
Procavia capensis
NNATHDNNN

NNNHDATNN
PBM
Weirauch et al.(2014)
pTH9384
0.432 0.388
Arid3a
M02651_2.00
Mus musculus
ATYAAA

TTTRAT
SELEX
Mathelier et al.(2014)
MA0151.1
0.432 0.388
ARID3A
M09766_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$DRI1_01
0.432 0.388
Arid3b
M01659_2.00
Mus musculus
NNDATTAAWWN

NWWTTAATHNN
PBM
Weirauch et al.(2014)
pTH4425
0.432 0.365
cfi-1
M01667_2.00
Caenorhabditis elegans
NNATHDNN

NNHDATNN
PBM
Weirauch et al.(2014)
pTH5118
0.432 0.318
TTHERM_00243900
M01666_2.00
Tetrahymena thermophila
NDDATYANN

NNTRATHHN
PBM
Weirauch et al.(2014)
pTH5128
0.425 0.388
For this family, TFs with SR scores > 0.422 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
orange1.1g029808m ARID/BRIGHT 45 130

Links

Other ARID/BRIGHT family TFs
Other Citrus sinensis TFs

322 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Bcin13g04290 Botrytis cinerea Bcin13g04290 I 0.000
CFIO01_13709 Colletotrichum fioriniae CFIO01_13709 I 0.000
CGGC5_5349 Colletotrichum gloeosporioides CGGC5_5349 I 0.000
CH063_01157 Colletotrichum higginsianum CH063_01157 I 0.000
CHGG_10292 Chaetomium globosum CHGG_10292 I 0.000
CSUB01_04852 Colletotrichum sublineola CSUB01_04852 I 0.000
estExt_fgenesh3_kg.C_100506 Neurospora discreta estExt_fgenesh3_kg.C_100506 I 0.000
F503_00525 Ophiostoma piceae uamh F503_00525 I 0.000
GGTG_10358 Gaeumannomyces graminis GGTG_10358 I 0.000
GLRG_08739 Colletotrichum graminicola GLRG_08739 I 0.000
HMPREF1624_08709 Sporothrix schenckii HMPREF1624_08709 I 0.000
MAPG_02519 Magnaporthe poae MAPG_02519 I 0.000
MBM_09584 Marssonina brunnea MBM_09584 I 0.000
MGG_03133 Magnaporthe oryzae MGG_03133 I 0.000
MYCTH_2312442 Myceliophthora thermophila MYCTH_2312442 I 0.000
NCU01629 Neurospora crassa NCU01629 D 0.000
NEUTE1DRAFT_130390 Neurospora tetrasperma NEUTE1DRAFT_130390 I 0.000
OCS_00830 Ophiocordyceps sinensis OCS_00830 I 0.000
OIDMADRAFT_123149 Oidiodendron maius OIDMADRAFT_123149 I 0.000
PFICI_04978 Pestalotiopsis fici PFICI_04978 I 0.000
PODANS_6_5390 Podospora anserina PODANS_6_5390 I 0.000
SBOR_4904 Sclerotinia borealis SBOR_4904 I 0.000
SMAC_02359 Sordaria macrospora SMAC_02359 I 0.000
SS1G_09588 Sclerotinia sclerotiorum SS1G_09588 I 0.000
THITE_2124193 Thielavia terrestris THITE_2124193 I 0.000
VDAG_10032 Verticillium dahliae VDAG_10032 I 0.000
VDBG_03423 Verticillium alfalfae VDBG_03423 I 0.000
VDBG_03423 Verticillium albo atrum VDBG_03423 I 0.000