Pavir.Da00612 (Panicum virgatum)
ARID/BRIGHT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF01388 (ARID) IPR001606 Pavir.Da00612 T016164_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Da00612.1.p ARID/BRIGHT 223 274

Links

Other ARID/BRIGHT family TFs
Other Panicum virgatum TFs

70 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Pavir.J25952 Panicum virgatum Pavir.J25952 N 0.707
ORGLA07G0233500 Oryza glaberrima ORGLA07G0233500 N 0.671
PDK_20s1315202g001 Phoenix dactylifera PDK_20s1315202g001 N 0.671
MLOC_7381 Hordeum vulgare MLOC_7381 N 0.670
Traes_2AS_40ED2C7BC Triticum aestivum Traes_2AS_40ED2C7BC N 0.658
evm.TU.supercontig_70.18 Carica papaya evm.TU.supercontig_70.18 N 0.648
gene11760-v1.0-hybrid Fragaria vesca gene11760-v1.0-hybrid N 0.637
TRIUR3_29596 Triticum urartu TRIUR3_29596 N 0.633
Bra015737 Brassica rapa Bra015737 N 0.627
orange1.1g009744m.g Citrus sinensis orange1.1g009744m.g I 0.615
OS06G0622300 Oryza sativa OS06G0622300 I 0.608
F775_22367 Aegilops tauschii F775_22367 N 0.585
F775_31416 Aegilops tauschii F775_31416 N 0.571
SapurV1A.2929s0030 Salix purpurea SapurV1A.2929s0030 N 0.565
SapurV1A.0216s0430 Salix purpurea SapurV1A.0216s0430 N 0.565
PGSC0003DMG400047019 Solanum tuberosum PGSC0003DMG400047019 N 0.545
ENSCSAVG00000005880 Ciona savignyi ENSCSAVG00000005880 N 0.544
Genemark1.2983_g Coccomyxa subellipsoidea C169 Genemark1.2983_g N 0.542
MESCA003685 Megaselia scalaris MESCA003685 N 0.532
HHAL003716-PA Halyomorpha halys HHAL003716-PA N 0.530
Solyc12g038740.1 Solanum lycopersicum Solyc12g038740.1 N 0.523
ENSCJAG00000034027 Callithrix jacchus ENSCJAG00000034027 N 0.519
SROB_0001561301 Schistosoma rodhaini SROB_0001561301 N 0.519
SBAD_0000429301 Soboliphyme baturini SBAD_0000429301 N 0.519
SPER_0000246801 Spirometra erinaceieuropaei SPER_0000246801 N 0.519
SPER_0003392901 Spirometra erinaceieuropaei SPER_0003392901 N 0.519
SPER_0003827801 Spirometra erinaceieuropaei SPER_0003827801 N 0.519
Sjc_0111140 Schistosoma japonicum Sjc_0111140 N 0.519
SMTD_0000131801 Schistosoma mattheei SMTD_0000131801 N 0.519
GG.C169_S05_00378 Chlorella vulgaris GG.C169_S05_00378 N 0.510
GL12242 Drosophila persimilis FBgn0149849 N 0.496
ACOM023832 Anopheles coluzzii ACOM023832 N 0.496
GD20218 Drosophila simulans FBgn0191696 N 0.496
PGSC0003DMG401018896 Solanum tuberosum PGSC0003DMG401018896 N 0.487
e_gw1.8.356.1 Monosiga brevicollis e_gw1.8.356.1 N 0.484
SPU_003500 Strongylocentrotus purpuratus SPU_003500 N 0.482
Cflo_11029--XP_001120115.1_APIME Camponotus floridanus Cflo_11029--XP_001120115.1_APIME N 0.482
PDK_20s1490591g001 Phoenix dactylifera PDK_20s1490591g001 N 0.481
Solyc04g025930.1 Solanum lycopersicum Solyc04g025930.1 N 0.479
cassava32082.m1 Manihot esculenta cassava32082.m1 N 0.478
cassava33852.m1 Manihot esculenta cassava33852.m1 N 0.478
ANCCAN_16550 Ancylostoma caninum ANCCAN_16550 N 0.474
TRE_0000846701 Trichobilharzia regenti TRE_0000846701 N 0.473
Bo4g012540 Brassica oleracea Bo4g012540 N 0.473
SMTD_0001549501 Schistosoma mattheei SMTD_0001549501 N 0.473
OFLC_0000209301 Onchocerca flexuosa OFLC_0000209301 N 0.469
PHUM027610 Pediculus humanus PHUM027610 N 0.468
OESDEN_17751 Oesophagostomum dentatum OESDEN_17751 N 0.460
HCOI00647600 Haemonchus contortus HCOI00647600 N 0.460
Myotis_brandtii_KDM5D_10002268 Myotis brandtii Myotis_brandtii_KDM5D_10002268 N 0.457
Genemark.397_g Heterobasidion annosum Genemark.397_g N 0.455
HPBE_0000220801 Heligmosomoides bakeri HPBE_0000220801 N 0.449
SPU_009801 Strongylocentrotus purpuratus SPU_009801 N 0.447
ASIM_0001975501 Anisakis simplex ASIM_0001975501 N 0.447
Myotis_brandtii_ARID2_10029491 Myotis brandtii Myotis_brandtii_ARID2_10029491 N 0.447
YQE_11989 Dendroctonus ponderosae YQE_11989 N 0.446
ACEP25970 Atta cephalotes ACEP25970 N 0.445
GK21672 Drosophila willistoni FBgn0223657 N 0.441
ACRE_008210 Acremonium chrysogenum ACRE_008210 N 0.437
ARID5A Microcebus murinus ENSMICG00000001964 I 0.435
ARID5A Sorex araneus ENSSARG00000003004 I 0.435
SPER_0000445801 Spirometra erinaceieuropaei SPER_0000445801 N 0.433
Myotis_brandtii_Arid3c_10010321 Myotis brandtii Myotis_brandtii_Arid3c_10010321 N 0.433
Lus10008531.g Linum usitatissimum Lus10008531.g N 0.433
NV31651 Nasonia vitripennis NV31651 N 0.433
CapteG108943 Capitella teleta CapteG108943 N 0.429
BOTBODRAFT_44712 Botryobasidium botryosum BOTBODRAFT_44712 N 0.429
SVUK_0000804601 Strongylus vulgaris SVUK_0000804601 N 0.423
MCINX010724 Melitaea cinxia MCINX010724 N 0.423
Hsal_11763--XP_001120115.1_APIME Harpegnathos saltator Hsal_11763--XP_001120115.1_APIME N 0.423