CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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arid3a.L
(
Xenopus laevis
)
ARID/BRIGHT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF01388 (ARID)
IPR001606
XB-GENE-17332317
T016257_2.00
Misc (2018-Jan-19)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ARID3A
M01658_2.00
Microcebus murinus
NDATHAWDN
NHWTDATHN
PBM
Weirauch et al.(2014)
pTH9214
0.771
0.988
Arid3a
M00115_2.00
Mus musculus
NDATHADDN
NHHTDATHN
PBM
Badis et al.(2009)
Arid3a_3875
0.771
0.988
Arid3a
M01660_2.00
Mus musculus
NDATHAADN
NHTTDATHN
PBM
Weirauch et al.(2014)
pTH5169
0.771
0.988
Arid3a
M02651_2.00
Mus musculus
ATYAAA
TTTRAT
SELEX
Mathelier et al.(2014)
MA0151.1
0.771
0.988
ARID3A
M09766_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$DRI1_01
0.771
0.988
ARID3A
M01662_2.00
Procavia capensis
NNATHDNNN
NNNHDATNN
PBM
Weirauch et al.(2014)
pTH9384
0.771
0.977
cfi-1
M01667_2.00
Caenorhabditis elegans
NNATHDNN
NNHDATNN
PBM
Weirauch et al.(2014)
pTH5118
0.733
0.791
retn
M01664_2.00
Drosophila melanogaster
NDATHRNN
NNYDATHN
PBM
Weirauch et al.(2014)
pTH5119
0.720
0.849
retn
M03590_2.00
Drosophila melanogaster
NNATTRATHN
NDATYAATNN
SELEX
Nitta et al.(2015)
retn_1
0.720
0.849
retn
M05899_2.00
Drosophila melanogaster
AATYAAAM
KTTTRATT
B1H
Zhu et al.(2011)
retn_SANGER_5_FBgn0004795
0.720
0.849
retn
M09768_2.00
Drosophila melanogaster
NNRATTAADN
NHTTAATYNN
Transfac
Matys et al.(2006)
I$DRI_01
0.720
0.849
Arid3b
M01659_2.00
Mus musculus
NNDATTAAWWN
NWWTTAATHNN
PBM
Weirauch et al.(2014)
pTH4425
0.709
0.907
DDB_G0275333
M01656_2.00
Dictyostelium discoideum
NNATHDNNNN
NNNNHDATNN
PBM
Weirauch et al.(2014)
pTH5168
0.707
0.500
ACYPI009013
M01655_2.00
Acyrthosiphon pisum
NDATHAADN
NHTTDATHN
PBM
Weirauch et al.(2014)
pTH5117
0.697
0.698
GSPATT00004674001
M01665_2.00
Paramecium tetraurelia
NNATYHNN
NNDRATNN
PBM
Weirauch et al.(2014)
pTH5124
0.540
0.407
TTHERM_00243900
M01666_2.00
Tetrahymena thermophila
NDDATYANN
NNTRATHHN
PBM
Weirauch et al.(2014)
pTH5128
0.508
0.360
For this family, TFs with SR scores >
0.422
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
AAI57423
ARID/BRIGHT
214
300
KRKEFLDDLFSFMQKRGTPVNRIPIMAKQVLDLYMLYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKYLYPYE
Links
Other
ARID/BRIGHT
family TFs
Other
Xenopus laevis
TFs
368 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
F775_14570
Aegilops tauschii
F775_14570
N
0.000
F775_32094
Aegilops tauschii
F775_32094
N
0.000
BRADI1G66830
Brachypodium distachyon
BRADI1G66830
N
0.000
BRADI4G19540
Brachypodium distachyon
BRADI4G19540
N
0.000
PK16345.1
Cannabis sativa
PK16345.1
N
0.000
evm.TU.supercontig_73.29
Carica papaya
evm.TU.supercontig_73.29
N
0.000
Cla007091
Citrullus lanatus
Cla007091
N
0.000
Ciclev10030998m.g
Citrus clementina
Ciclev10030998m.g
N
0.000
orange1.1g007404m.g
Citrus sinensis
orange1.1g007404m.g
N
0.000
gene17946-v1.0-hybrid
Fragaria vesca
gene17946-v1.0-hybrid
N
0.000
Gorai.007G347300
Gossypium raimondii
Gorai.007G347300
N
0.000
MLOC_59299
Hordeum vulgare
MLOC_59299
N
0.000
LPERR11G10050
Leersia perrieri
LPERR11G10050
N
0.000
chr1.CM0017.250.nc
Lotus japonicus
chr1.CM0017.250.nc
N
0.000
GSMUA_Achr7G04860_001
Musa acuminata
GSMUA_Achr7G04860_001
N
0.000
OBART03G12110
Oryza barthii
OBART03G12110
N
0.000
OB11G19800
Oryza brachyantha
OB11G19800
N
0.000
OB03G22220
Oryza brachyantha
OB03G22220
N
0.000
ORGLA11G0105900
Oryza glaberrima
ORGLA11G0105900
N
0.000
ORGLA03G0116800
Oryza glaberrima
ORGLA03G0116800
N
0.000
OGLUM11G12180
Oryza glumaepatula
OGLUM11G12180
N
0.000
BGIOSGA012312
Oryza indica
BGIOSGA012312
N
0.000
BGIOSGA015860
Oryza indica
BGIOSGA015860
N
0.000
OLONG_007716
Oryza longistaminata
OLONG_007716
N
0.000
OLONG_012202
Oryza longistaminata
OLONG_012202
N
0.000
ONIVA03G13860
Oryza nivara
ONIVA03G13860
N
0.000
OPUNC11G10590
Oryza punctata
OPUNC11G10590
N
0.000
OPUNC03G11670
Oryza punctata
OPUNC03G11670
N
0.000
OS03G0271100
Oryza sativa
OS03G0271100
N
0.000
OS11G0448400
Oryza sativa
OS11G0448400
N
0.000
Pavir.J05262
Panicum virgatum
Pavir.J05262
N
0.000
Pavir.Hb00670
Panicum virgatum
Pavir.Hb00670
N
0.000
Pavir.Ia03759
Panicum virgatum
Pavir.Ia03759
N
0.000
Pavir.J38369
Panicum virgatum
Pavir.J38369
N
0.000
POPTR_0013s06770
Populus trichocarpa
POPTR_0013s06770
N
0.000
30148.m001412
Ricinus communis
30148.m001412
N
0.000
Si035112m.g
Setaria italica
Si035112m.g
N
0.000
Si026193m.g
Setaria italica
Si026193m.g
N
0.000
Solyc01g081490.2
Solanum lycopersicum
Solyc01g081490.2
N
0.000
PGSC0003DMG400031111
Solanum tuberosum
PGSC0003DMG400031111
N
0.000
Sb01g039810
Sorghum bicolor
Sb01g039810
N
0.000
Sb0010s016080
Sorghum bicolor
Sb0010s016080
N
0.000
TCM_025741
Theobroma cacao
TCM_025741
N
0.000
Traes_4DL_65B3128BF
Triticum aestivum
Traes_4DL_65B3128BF
N
0.000
Traes_4AL_26117D669
Triticum aestivum
Traes_4AL_26117D669
N
0.000
Traes_4AS_26117D669
Triticum aestivum
Traes_4AS_26117D669
N
0.000
Traes_4AS_DE644E0CF
Triticum aestivum
Traes_4AS_DE644E0CF
N
0.000
Traes_4BL_9CB9E3F96
Triticum aestivum
Traes_4BL_9CB9E3F96
N
0.000
Traes_4DL_B8D22E4C2
Triticum aestivum
Traes_4DL_B8D22E4C2
N
0.000
TRIUR3_30646
Triticum urartu
TRIUR3_30646
N
0.000
GRMZM2G143392
Zea mays
GRMZM2G143392
N
0.000
GRMZM2G164084
Zea mays
GRMZM2G164084
N
0.000
GRMZM2G003182
Zea mays
GRMZM2G003182
N
0.000
GRMZM2G100086
Zea mays
GRMZM2G100086
N
0.000