arid3a.L (Xenopus laevis)
ARID/BRIGHT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF01388 (ARID) IPR001606 XB-GENE-17332317 T016257_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ARID3A
M01658_2.00 		Microcebus murinus
NDATHAWDN
NHWTDATHN		 PBM
Weirauch et al.(2014)
pTH9214 		0.771 0.988
Arid3a
M00115_2.00 		Mus musculus
NDATHADDN
NHHTDATHN		 PBM
Badis et al.(2009)
Arid3a_3875 		0.771 0.988
Arid3a
M01660_2.00 		Mus musculus
NDATHAADN
NHTTDATHN		 PBM
Weirauch et al.(2014)
pTH5169 		0.771 0.988
Arid3a
M02651_2.00 		Mus musculus
ATYAAA
TTTRAT		 SELEX
Mathelier et al.(2014)
MA0151.1 		0.771 0.988
ARID3A
M09766_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$DRI1_01 		0.771 0.988
ARID3A
M01662_2.00 		Procavia capensis
NNATHDNNN
NNNHDATNN		 PBM
Weirauch et al.(2014)
pTH9384 		0.771 0.977
cfi-1
M01667_2.00 		Caenorhabditis elegans
NNATHDNN
NNHDATNN		 PBM
Weirauch et al.(2014)
pTH5118 		0.733 0.791
retn
M01664_2.00 		Drosophila melanogaster
NDATHRNN
NNYDATHN		 PBM
Weirauch et al.(2014)
pTH5119 		0.720 0.849
retn
M03590_2.00 		Drosophila melanogaster
NNATTRATHN
NDATYAATNN		 SELEX
Nitta et al.(2015)
retn_1 		0.720 0.849
retn
M05899_2.00 		Drosophila melanogaster
AATYAAAM
KTTTRATT		 B1H
Zhu et al.(2011)
retn_SANGER_5_FBgn0004795 		0.720 0.849
retn
M09768_2.00 		Drosophila melanogaster
NNRATTAADN
NHTTAATYNN		 Transfac
Matys et al.(2006)
I$DRI_01 		0.720 0.849
Arid3b
M01659_2.00 		Mus musculus
NNDATTAAWWN
NWWTTAATHNN		 PBM
Weirauch et al.(2014)
pTH4425 		0.709 0.907
DDB_G0275333
M01656_2.00 		Dictyostelium discoideum
NNATHDNNNN
NNNNHDATNN		 PBM
Weirauch et al.(2014)
pTH5168 		0.707 0.500
ACYPI009013
M01655_2.00 		Acyrthosiphon pisum
NDATHAADN
NHTTDATHN		 PBM
Weirauch et al.(2014)
pTH5117 		0.697 0.698
GSPATT00004674001
M01665_2.00 		Paramecium tetraurelia
NNATYHNN
NNDRATNN		 PBM
Weirauch et al.(2014)
pTH5124 		0.540 0.407
TTHERM_00243900
M01666_2.00 		Tetrahymena thermophila
NDDATYANN
NNTRATHHN		 PBM
Weirauch et al.(2014)
pTH5128 		0.508 0.360
For this family, TFs with SR scores > 0.422 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AAI57423 ARID/BRIGHT 214 300

Links

Other ARID/BRIGHT family TFs
Other Xenopus laevis TFs

368 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_14570 Aegilops tauschii F775_14570 N 0.000
F775_32094 Aegilops tauschii F775_32094 N 0.000
BRADI1G66830 Brachypodium distachyon BRADI1G66830 N 0.000
BRADI4G19540 Brachypodium distachyon BRADI4G19540 N 0.000
PK16345.1 Cannabis sativa PK16345.1 N 0.000
evm.TU.supercontig_73.29 Carica papaya evm.TU.supercontig_73.29 N 0.000
Cla007091 Citrullus lanatus Cla007091 N 0.000
Ciclev10030998m.g Citrus clementina Ciclev10030998m.g N 0.000
orange1.1g007404m.g Citrus sinensis orange1.1g007404m.g N 0.000
gene17946-v1.0-hybrid Fragaria vesca gene17946-v1.0-hybrid N 0.000
Gorai.007G347300 Gossypium raimondii Gorai.007G347300 N 0.000
MLOC_59299 Hordeum vulgare MLOC_59299 N 0.000
LPERR11G10050 Leersia perrieri LPERR11G10050 N 0.000
chr1.CM0017.250.nc Lotus japonicus chr1.CM0017.250.nc N 0.000
GSMUA_Achr7G04860_001 Musa acuminata GSMUA_Achr7G04860_001 N 0.000
OBART03G12110 Oryza barthii OBART03G12110 N 0.000
OB11G19800 Oryza brachyantha OB11G19800 N 0.000
OB03G22220 Oryza brachyantha OB03G22220 N 0.000
ORGLA11G0105900 Oryza glaberrima ORGLA11G0105900 N 0.000
ORGLA03G0116800 Oryza glaberrima ORGLA03G0116800 N 0.000
OGLUM11G12180 Oryza glumaepatula OGLUM11G12180 N 0.000
BGIOSGA012312 Oryza indica BGIOSGA012312 N 0.000
BGIOSGA015860 Oryza indica BGIOSGA015860 N 0.000
OLONG_007716 Oryza longistaminata OLONG_007716 N 0.000
OLONG_012202 Oryza longistaminata OLONG_012202 N 0.000
ONIVA03G13860 Oryza nivara ONIVA03G13860 N 0.000
OPUNC11G10590 Oryza punctata OPUNC11G10590 N 0.000
OPUNC03G11670 Oryza punctata OPUNC03G11670 N 0.000
OS03G0271100 Oryza sativa OS03G0271100 N 0.000
OS11G0448400 Oryza sativa OS11G0448400 N 0.000
Pavir.J05262 Panicum virgatum Pavir.J05262 N 0.000
Pavir.Hb00670 Panicum virgatum Pavir.Hb00670 N 0.000
Pavir.Ia03759 Panicum virgatum Pavir.Ia03759 N 0.000
Pavir.J38369 Panicum virgatum Pavir.J38369 N 0.000
POPTR_0013s06770 Populus trichocarpa POPTR_0013s06770 N 0.000
30148.m001412 Ricinus communis 30148.m001412 N 0.000
Si035112m.g Setaria italica Si035112m.g N 0.000
Si026193m.g Setaria italica Si026193m.g N 0.000
Solyc01g081490.2 Solanum lycopersicum Solyc01g081490.2 N 0.000
PGSC0003DMG400031111 Solanum tuberosum PGSC0003DMG400031111 N 0.000
Sb01g039810 Sorghum bicolor Sb01g039810 N 0.000
Sb0010s016080 Sorghum bicolor Sb0010s016080 N 0.000
TCM_025741 Theobroma cacao TCM_025741 N 0.000
Traes_4DL_65B3128BF Triticum aestivum Traes_4DL_65B3128BF N 0.000
Traes_4AL_26117D669 Triticum aestivum Traes_4AL_26117D669 N 0.000
Traes_4AS_26117D669 Triticum aestivum Traes_4AS_26117D669 N 0.000
Traes_4AS_DE644E0CF Triticum aestivum Traes_4AS_DE644E0CF N 0.000
Traes_4BL_9CB9E3F96 Triticum aestivum Traes_4BL_9CB9E3F96 N 0.000
Traes_4DL_B8D22E4C2 Triticum aestivum Traes_4DL_B8D22E4C2 N 0.000
TRIUR3_30646 Triticum urartu TRIUR3_30646 N 0.000
GRMZM2G143392 Zea mays GRMZM2G143392 N 0.000
GRMZM2G164084 Zea mays GRMZM2G164084 N 0.000
GRMZM2G003182 Zea mays GRMZM2G003182 N 0.000
GRMZM2G100086 Zea mays GRMZM2G100086 N 0.000