CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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augustus_masked-nMf.1.1.scaf10960-processed-gene-0.0
(
Meloidogyne floridensis
)
ARID/BRIGHT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF01388 (ARID)
IPR001606
augustus_masked-nMf.1.1.scaf10960-processed-gene-0.0
T016485_2.00
WormBase:ParaSite (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ACYPI009013
M01655_2.00
Acyrthosiphon pisum
NDATHAADN
NHTTDATHN
PBM
Weirauch et al.(2014)
pTH5117
0.424
0.333
For this family, TFs with SR scores >
0.422
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
augustus_masked-nMf.1.1.scaf10960-processed-gene-0.0-mRNA-1
ARID/BRIGHT
133
220
ERRLFFERLVMLNEQHGEVLSGPPQVSKSPVDLYSLYYAVKLRGGFEKTIRDKIWKNLCVDANTEMQQSSAAGFQLRKHYQKYLLRLE
Links
Other
ARID/BRIGHT
family TFs
Other
Meloidogyne floridensis
TFs
52 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy