TRE_0000223901 (Trichobilharzia regenti)
ARID/BRIGHT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF01388 (ARID) IPR001606 TRE_0000223901 T016747_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
cfi-1
M01667_2.00
Caenorhabditis elegans
NNATHDNN

NNHDATNN
PBM
Weirauch et al.(2014)
pTH5118
0.667 0.887
ARID3A
M01658_2.00
Microcebus murinus
NDATHAWDN

NHWTDATHN
PBM
Weirauch et al.(2014)
pTH9214
0.653 0.871
Arid3a
M00115_2.00
Mus musculus
NDATHADDN

NHHTDATHN
PBM
Badis et al.(2009)
Arid3a_3875
0.653 0.871
Arid3a
M01660_2.00
Mus musculus
NDATHAADN

NHTTDATHN
PBM
Weirauch et al.(2014)
pTH5169
0.653 0.871
Arid3a
M02651_2.00
Mus musculus
ATYAAA

TTTRAT
SELEX
Mathelier et al.(2014)
MA0151.1
0.653 0.871
ARID3A
M09766_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$DRI1_01
0.653 0.871
ARID3A
M01662_2.00
Procavia capensis
NNATHDNNN

NNNHDATNN
PBM
Weirauch et al.(2014)
pTH9384
0.653 0.855
retn
M01664_2.00
Drosophila melanogaster
NDATHRNN

NNYDATHN
PBM
Weirauch et al.(2014)
pTH5119
0.643 0.871
retn
M03590_2.00
Drosophila melanogaster
NNATTRATHN

NDATYAATNN
SELEX
Nitta et al.(2015)
retn_1
0.643 0.871
retn
M05899_2.00
Drosophila melanogaster
AATYAAAM

KTTTRATT
B1H
Zhu et al.(2011)
retn_SANGER_5_FBgn0004795
0.643 0.871
retn
M09768_2.00
Drosophila melanogaster
NNRATTAADN

NHTTAATYNN
Transfac
Matys et al.(2006)
I$DRI_01
0.643 0.871
ACYPI009013
M01655_2.00
Acyrthosiphon pisum
NDATHAADN

NHTTDATHN
PBM
Weirauch et al.(2014)
pTH5117
0.643 0.758
DDB_G0275333
M01656_2.00
Dictyostelium discoideum
NNATHDNNNN

NNNNHDATNN
PBM
Weirauch et al.(2014)
pTH5168
0.617 0.500
Arid3b
M01659_2.00
Mus musculus
NNDATTAAWWN

NWWTTAATHNN
PBM
Weirauch et al.(2014)
pTH4425
0.591 0.823
GSPATT00004674001
M01665_2.00
Paramecium tetraurelia
NNATYHNN

NNDRATNN
PBM
Weirauch et al.(2014)
pTH5124
0.509 0.419
TTHERM_00243900
M01666_2.00
Tetrahymena thermophila
NDDATYANN

NNTRATHHN
PBM
Weirauch et al.(2014)
pTH5128
0.477 0.419
For this family, TFs with SR scores > 0.422 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
TRE_0000223901-mRNA-1 ARID/BRIGHT 1 62

Links

Other ARID/BRIGHT family TFs
Other Trichobilharzia regenti TFs

372 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
CADAORAG00008661 Aspergillus oryzae CADAORAG00008661 N 0.000