CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Carubv10000553m.g
(
Capsella rubella
)
ARID/BRIGHT,Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF01388 (ARID)
PF00249 (Myb_DNA-binding)
IPR001606
IPR014778
Carubv10000553m.g
T016800_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Carubv10000553m
ARID/BRIGHT
39
123
LRRLFDQALLFFLEEEGNVSSLPAVLGDGENVDLFKLFVLVCEREGFDSVSRNGLWDSVAEKLGSDCYVSPSLRLVYSKYLDRME
Carubv10000553m
Myb
483
527
LGWTEREEKRFKDMIIADPFFWKNTVKYLPGRKRKQLVHYYFNVF
Links
Other
ARID/BRIGHT,Myb/SANT
family TFs
Other
Capsella rubella
TFs
3 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Cagra.4698s0006
Capsella grandiflora
Cagra.4698s0006
N
0.992
Thhalv10028531m.g
Eutrema salsugineum
Thhalv10028531m.g
N
0.750
ARID2
Arabidopsis thaliana
AT4G11400
N
0.734