Gfo_R004053 (Geospiza fortis)
ARID/BRIGHT,RFX

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF01388 (ARID)
PF02257 (RFX_DNA_binding)
IPR001606
IPR003150
Gfo_R004053 T016937_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Gfo_R004053 ARID/BRIGHT 15 101
Gfo_R004053 RFX 519 601

Links

Other ARID/BRIGHT,RFX family TFs
Other Geospiza fortis TFs

38 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Arid2 Mus musculus ENSMUSG00000033237 I 0.958
ARID2 Anolis carolinensis ENSACAG00000002402 N 0.970
ENSONIG00000011901 Oreochromis niloticus ENSONIG00000011901 N 0.782
ARID2 Procavia capensis ENSPCAG00000015312 N 0.939
ENSPFOG00000011270 Poecilia formosa ENSPFOG00000011270 N 0.764
ENSPPYG00000004433 Pongo abelii ENSPPYG00000004433 N 0.976
ENSPSIG00000006686 Pelodiscus sinensis ENSPSIG00000006686 N 0.994
ARID2 Pan troglodytes ENSPTRG00000004853 N 0.775
Arid2 Rattus norvegicus ENSRNOG00000004831 N 0.952
ENSSTOG00000008936 Ictidomys tridecemlineatus ENSSTOG00000008936 N 0.709
ENSTGUG00000006070 Taeniopygia guttata ENSTGUG00000006070 N 1.000
arid2 Tetraodon nigroviridis ENSTNIG00000005771 N 0.764
arid2 Takifugu rubripes ENSTRUG00000004073 N 0.782
Aan_R012350 Calypte anna Aan_R012350 N 0.994
Afo_R010305 Aptenodytes forsteri Afo_R010305 N 0.994
Brh_R012991 Buceros rhinoceros Brh_R012991 N 0.994
Ogr00113 Ophisaurus gracilis Ogr00113 N 0.982
Pvit_11514 Pogona vitticeps Pvit_11514 N 0.976
ARID2 Otolemur garnettii ENSOGAG00000024418 N 0.715
ENSOARG00000019554 Ovis aries ENSOARG00000019554 N 0.976
ENSNLEG00000017919 Nomascus leucogenys ENSNLEG00000017919 N 0.709
ENSAMEG00000013404 Ailuropoda melanoleuca ENSAMEG00000013404 N 0.970
ENSAMXG00000012189 Astyanax mexicanus ENSAMXG00000012189 N 0.794
ENSAPLG00000010567 Anas platyrhynchos ENSAPLG00000010567 N 0.994
ARID2 Canis familiaris ENSCAFG00000009335 N 0.891
ARID2 Callithrix jacchus ENSCJAG00000013099 N 0.709
arid2 Danio rerio ENSDARG00000007413 N 0.824
ENSFALG00000010156 Ficedula albicollis ENSFALG00000010156 N 1.000
ARID2 Felis catus ENSFCAG00000012831 N 0.879
ARID2 Homo sapiens ENSG00000189079 N 0.970
arid2 Gasterosteus aculeatus ENSGACG00000019522 N 0.770
ENSGALG00000009665 Gallus gallus ENSGALG00000009665 N 0.994
ARID2 Gorilla gorilla ENSGGOG00000013896 N 0.976
ENSGMOG00000016013 Gadus morhua ENSGMOG00000016013 N 0.741
ENSLOCG00000016423 Lepisosteus oculatus ENSLOCG00000016423 N 0.855
ARID2 Meleagris gallopavo ENSMGAG00000009656 N 0.994
ENSMPUG00000000380 Mustela putorius furo ENSMPUG00000000380 N 0.703
arid2 Xenopus tropicalis XB-GENE-6070950 N 0.867