HMGB15 (Arabidopsis thaliana)
ARID/BRIGHT,Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF01388 (ARID)
PF00505 (HMG_box) 		IPR001606
IPR000910 		AT1G04880 T017004_2.00 Ensembl (2018-Dec-8) Link out
NCBI Gene Info:
LHY encodes a myb-related putative transcription factor involved in circadian rhythm along with another myb transcription factor CCA1

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HMGB15
M06696_2.00		 Arabidopsis thaliana
TWTAWWATAWRGTWTW
WAWACYWTATWWTAWA		 Dap-seq
OMalley et al.(2016)
AT1G04880_col_a		 (Direct) (Direct)
HMGB15
M06697_2.00		 Arabidopsis thaliana
TATAWHATATRGTWT
AWACYATATDWTATA		 Dap-seq
OMalley et al.(2016)
AT1G04880_colamp_a		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AT1G04880.1 ARID/BRIGHT 31 116
AT1G04880.1 Sox 263 330

Links

Other ARID/BRIGHT,Sox family TFs
Other Arabidopsis thaliana TFs

45 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
fgenesh2_kg.1__427__AT1G04880.1 Arabidopsis lyrata fgenesh2_kg.1__427__AT1G04880.1 I 0.974
Bostr.25219s0485 Boechera stricta Bostr.25219s0485 I 0.961
Cagra.1671s0107 Capsella grandiflora Cagra.1671s0107 I 0.954
Carubv10010835m.g Capsella rubella Carubv10010835m.g I 0.954
Thhalv10007631m.g Eutrema salsugineum Thhalv10007631m.g I 0.954
Bra032491 Brassica rapa Bra032491 I 0.941
Bo8g115380 Brassica oleracea Bo8g115380 I 0.941
Bra015358 Brassica rapa Bra015358 I 0.889
Bo5g004970 Brassica oleracea Bo5g004970 I 0.863
Bra030594 Brassica rapa Bra030594 I 0.837
Bo8g004290 Brassica oleracea Bo8g004290 I 0.830
orange1.1g046368m.g Citrus sinensis orange1.1g046368m.g I 0.820
Ciclev10005091m.g Citrus clementina Ciclev10005091m.g I 0.797
PK27727.1 Cannabis sativa PK27727.1 I 0.797
TCM_020322 Theobroma cacao TCM_020322 I 0.797
Gorai.005G130200 Gossypium raimondii Gorai.005G130200 I 0.796
MDP0000307705 Malus domestica MDP0000307705 I 0.791
evm.TU.supercontig_1068.1 Carica papaya evm.TU.supercontig_1068.1 I 0.791
Eucgr.H00052 Eucalyptus grandis Eucgr.H00052 I 0.791
Pm009491 Prunus mume Pm009491 I 0.791
PRUPE_ppa026976mg Prunus persica PRUPE_ppa026976mg I 0.791
Lus10007127.g Linum usitatissimum Lus10007127.g I 0.784
Lus10016671.g Linum usitatissimum Lus10016671.g I 0.784
VIT_05s0029g00130 Vitis vinifera VIT_05s0029g00130 I 0.784
Gorai.011G157600 Gossypium raimondii Gorai.011G157600 I 0.784
Ca_21617 Cicer arietinum Ca_21617 I 0.784
29904.m002943 Ricinus communis 29904.m002943 I 0.784
Cla003004 Citrullus lanatus Cla003004 I 0.780
cassava27713.m1 Manihot esculenta cassava27713.m1 I 0.771
Cucsa.193910 Cucumis sativus Cucsa.193910 I 0.765
GLYMA10G44041 Glycine max GLYMA10G44041 I 0.765
cassava14246.m1 Manihot esculenta cassava14246.m1 I 0.765
gene06664-v1.0-hybrid Fragaria vesca gene06664-v1.0-hybrid I 0.758
GLYMA20G38761 Glycine max GLYMA20G38761 I 0.758
SapurV1A.1542s0040 Salix purpurea SapurV1A.1542s0040 I 0.752
SapurV1A.5889s0010 Salix purpurea SapurV1A.5889s0010 I 0.745
MTR_1g116180 Medicago truncatula MTR_1g116180 I 0.739
SapurV1A.0058s0580 Salix purpurea SapurV1A.0058s0580 I 0.732
MTR_7g005970 Medicago truncatula MTR_7g005970 I 0.732
Solyc09g091960.2 Solanum lycopersicum Solyc09g091960.2 I 0.732
GSMUA_Achr8G28470_001 Musa acuminata GSMUA_Achr8G28470_001 I 0.732
POPTR_0001s32240 Populus trichocarpa POPTR_0001s32240 I 0.719
AMTR_s00089p00097770 Amborella trichopoda AMTR_s00089p00097770 I 0.713
PGSC0003DMG400031288 Solanum tuberosum PGSC0003DMG400031288 I 0.712
GSMUA_Achr6G21080_001 Musa acuminata GSMUA_Achr6G21080_001 I 0.712