HMGB9 (Arabidopsis thaliana)
ARID/BRIGHT,Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF01388 (ARID)
PF00505 (HMG_box)
IPR001606
IPR000910
AT1G76110 T017006_2.00 Ensembl (2018-Dec-8) Link out
NCBI Gene Info:
Encodes BZS1, a brassinosteroids-regulated BZR1 target (BRBT) gene. BZS1 is a putative zinc finger transcription factor. Expression of BZS1 was increased under BR-deficient condition and repressed by BR. Transgenic Arabidopsis plants overexpressing BZS1 showed a hypersensitivity to the BR biosynthetic inhibitor brassinazole (BRZ). In contrast, transgenic plants expressing reduced level of BZS1 had longer hypocotyls than wild type when grown on BRZ.

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
HMGB9
M06698_2.00
Arabidopsis thaliana
WWHAWTTAATN

NATTAAWTDWW
Dap-seq
OMalley et al.(2016)
At1g76110_col_a
(Direct) (Direct)
HMGB9
M06699_2.00
Arabidopsis thaliana
ATTWAWNATTWAATD

HATTWAATNWTWAAT
Dap-seq
OMalley et al.(2016)
At1g76110_colamp_a
(Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AT1G76110.1 ARID/BRIGHT 40 125
AT1G76110.1 Sox 255 322

Links

Other ARID/BRIGHT,Sox family TFs
Other Arabidopsis thaliana TFs

32 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
fgenesh2_kg.2__1891__AT1G76110.1 Arabidopsis lyrata fgenesh2_kg.2__1891__AT1G76110.1 I 0.987
Bostr.20129s0046 Boechera stricta Bostr.20129s0046 I 0.974
Cagra.0799s0081 Capsella grandiflora Cagra.0799s0081 I 0.967
Carubv10020597m.g Capsella rubella Carubv10020597m.g I 0.967
Thhalv10018826m.g Eutrema salsugineum Thhalv10018826m.g I 0.948
Bo6g120140 Brassica oleracea Bo6g120140 I 0.934
Bra015787 Brassica rapa Bra015787 I 0.928
orange1.1g020305m.g Citrus sinensis orange1.1g020305m.g I 0.870
Cucsa.271870 Cucumis sativus Cucsa.271870 I 0.861
Gorai.009G190400 Gossypium raimondii Gorai.009G190400 I 0.854
Ciclev10001816m.g Citrus clementina Ciclev10001816m.g I 0.850
cassava21037.m1 Manihot esculenta cassava21037.m1 I 0.843
TCM_034318 Theobroma cacao TCM_034318 I 0.843
SapurV1A.0573s0150 Salix purpurea SapurV1A.0573s0150 I 0.842
evm.TU.supercontig_26.248 Carica papaya evm.TU.supercontig_26.248 I 0.837
MTR_3g114920 Medicago truncatula MTR_3g114920 I 0.837
Ca_04857 Cicer arietinum Ca_04857 I 0.837
30170.m014303 Ricinus communis 30170.m014303 I 0.836
POPTR_0005s26800 Populus trichocarpa POPTR_0005s26800 I 0.836
PK27175.1 Cannabis sativa PK27175.1 I 0.828
GLYMA04G02210 Glycine max GLYMA04G02210 I 0.824
gene08596-v1.0-hybrid Fragaria vesca gene08596-v1.0-hybrid I 0.817
Eucgr.F03526 Eucalyptus grandis Eucgr.F03526 I 0.813
Lus10021228.g Linum usitatissimum Lus10021228.g I 0.810
PRUPE_ppa009338mg Prunus persica PRUPE_ppa009338mg I 0.810
Pm006137 Prunus mume Pm006137 I 0.807
MDP0000204804 Malus domestica MDP0000204804 I 0.791
GSMUA_Achr3G00570_001 Musa acuminata GSMUA_Achr3G00570_001 I 0.745
GSMUA_Achr8G34160_001 Musa acuminata GSMUA_Achr8G34160_001 I 0.732
VIT_18s0001g00660 Vitis vinifera VIT_18s0001g00660 I 0.725
GSMUA_Achr1G14960_001 Musa acuminata GSMUA_Achr1G14960_001 I 0.725
Solyc12g094440.1 Solanum lycopersicum Solyc12g094440.1 I 0.706