CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Bo6g120140
(
Brassica oleracea
)
ARID/BRIGHT,Sox
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF01388 (ARID)
PF00505 (HMG_box)
IPR001606
IPR000910
Bo6g120140
T017013_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
HMGB9
M06698_2.00
Arabidopsis thaliana
WWHAWTTAATN
NATTAAWTDWW
Dap-seq
OMalley et al.(2016)
At1g76110_col_a
0.934
0.934
HMGB9
M06699_2.00
Arabidopsis thaliana
ATTWAWNATTWAATD
HATTWAATNWTWAAT
Dap-seq
OMalley et al.(2016)
At1g76110_colamp_a
0.934
0.934
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Bo6g120140.1
ARID/BRIGHT
78
162
LSLFWDTLRRFHSILATKFMIPVIGGKELDLHVLYVEVTRRGGYEKVVTEKKWREVGGVFRFSATTTSASFVLRKHYLNLLFHYE
Bo6g120140.1
Sox
293
360
PKPNRSGYNFFFAEKHCKLKSLYPNKEREFTKIIGESWSNLSAEERLVYQKIGLEDKERYQRELNEYR
Links
Other
ARID/BRIGHT,Sox
family TFs
Other
Brassica oleracea
TFs
31 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Bra015787
Brassica rapa
Bra015787
I
0.993
Thhalv10018826m.g
Eutrema salsugineum
Thhalv10018826m.g
I
0.967
Bostr.20129s0046
Boechera stricta
Bostr.20129s0046
I
0.941
Cagra.0799s0081
Capsella grandiflora
Cagra.0799s0081
I
0.941
Carubv10020597m.g
Capsella rubella
Carubv10020597m.g
I
0.941
fgenesh2_kg.2__1891__AT1G76110.1
Arabidopsis lyrata
fgenesh2_kg.2__1891__AT1G76110.1
I
0.941
HMGB9
Arabidopsis thaliana
AT1G76110
D
0.934
cassava21037.m1
Manihot esculenta
cassava21037.m1
I
0.849
Ciclev10001816m.g
Citrus clementina
Ciclev10001816m.g
I
0.836
orange1.1g020305m.g
Citrus sinensis
orange1.1g020305m.g
I
0.836
MTR_3g114920
Medicago truncatula
MTR_3g114920
I
0.836
Cucsa.271870
Cucumis sativus
Cucsa.271870
I
0.829
Ca_04857
Cicer arietinum
Ca_04857
I
0.824
TCM_034318
Theobroma cacao
TCM_034318
I
0.822
Lus10021228.g
Linum usitatissimum
Lus10021228.g
I
0.822
Gorai.009G190400
Gossypium raimondii
Gorai.009G190400
I
0.822
SapurV1A.0573s0150
Salix purpurea
SapurV1A.0573s0150
I
0.822
30170.m014303
Ricinus communis
30170.m014303
I
0.822
POPTR_0005s26800
Populus trichocarpa
POPTR_0005s26800
I
0.816
PRUPE_ppa009338mg
Prunus persica
PRUPE_ppa009338mg
I
0.816
evm.TU.supercontig_26.248
Carica papaya
evm.TU.supercontig_26.248
I
0.809
GLYMA04G02210
Glycine max
GLYMA04G02210
I
0.809
gene08596-v1.0-hybrid
Fragaria vesca
gene08596-v1.0-hybrid
I
0.803
PK27175.1
Cannabis sativa
PK27175.1
I
0.803
MDP0000204804
Malus domestica
MDP0000204804
I
0.803
Eucgr.F03526
Eucalyptus grandis
Eucgr.F03526
I
0.789
Pm006137
Prunus mume
Pm006137
I
0.776
GSMUA_Achr3G00570_001
Musa acuminata
GSMUA_Achr3G00570_001
I
0.730
VIT_18s0001g00660
Vitis vinifera
VIT_18s0001g00660
I
0.724
Solyc12g094440.1
Solanum lycopersicum
Solyc12g094440.1
I
0.704
GSMUA_Achr8G34160_001
Musa acuminata
GSMUA_Achr8G34160_001
I
0.704