CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Bo6g120140
(
Brassica oleracea
)
ARID/BRIGHT,Sox
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF01388 (ARID)
PF00505 (HMG_box)
IPR001606
IPR000910
Bo6g120140
T017013_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
HMGB9
M06698_2.00
Arabidopsis thaliana
WWHAWTTAATN
NATTAAWTDWW
Dap-seq
OMalley et al.(2016)
At1g76110_col_a
0.934
0.934
HMGB9
M06699_2.00
Arabidopsis thaliana
ATTWAWNATTWAATD
HATTWAATNWTWAAT
Dap-seq
OMalley et al.(2016)
At1g76110_colamp_a
0.934
0.934
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Bo6g120140.1
ARID/BRIGHT
78
162
LSLFWDTLRRFHSILATKFMIPVIGGKELDLHVLYVEVTRRGGYEKVVTEKKWREVGGVFRFSATTTSASFVLRKHYLNLLFHYE
Bo6g120140.1
Sox
293
360
PKPNRSGYNFFFAEKHCKLKSLYPNKEREFTKIIGESWSNLSAEERLVYQKIGLEDKERYQRELNEYR
Links
Other
ARID/BRIGHT,Sox
family TFs
Other
Brassica oleracea
TFs
31 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
BGHDH14_bgh04116
Blumeria graminis
BGHDH14_bgh04116
N
0.000
KLTH0E10978g
Kluyveromyces thermotolerans
KLTH0E10978g
N
0.000
estExt_Genewise1.C_sca_3_chr4_2_00632
Nectria haematococca
estExt_Genewise1.C_sca_3_chr4_2_00632
N
0.000
NechaG60026
Fusarium solani
NechaG60026
N
0.000
NCAS_0C02550
Naumovozyma castellii
NCAS_0C02550
N
0.000
MYCTH_2305929
Myceliophthora thermophila
MYCTH_2305929
N
0.000
KLTH0E10978g
Lachancea thermotolerans
KLTH0E10978g
N
0.000
FVEG_04708
Fusarium verticillioides
FVEG_04708
N
0.000
FPSE_04226
Fusarium pseudograminearum
FPSE_04226
N
0.000
FOXG_07781
Fusarium oxysporum
FOXG_07781
N
0.000
FGRRES_06071
Fusarium graminearum
FGRRES_06071
N
0.000
FFUJ_13265
Fusarium fujikuroi
FFUJ_13265
N
0.000
Cob_01816
Colletotrichum orbiculare
Cob_01816
N
0.000
Kwal_11747
Kluyveromyces waltii
Kwal_11747
N
0.000