Bo6g120140 (Brassica oleracea)
ARID/BRIGHT,Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF01388 (ARID)
PF00505 (HMG_box)
IPR001606
IPR000910
Bo6g120140 T017013_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
HMGB9
M06698_2.00
Arabidopsis thaliana
WWHAWTTAATN

NATTAAWTDWW
Dap-seq
OMalley et al.(2016)
At1g76110_col_a
0.934 0.934
HMGB9
M06699_2.00
Arabidopsis thaliana
ATTWAWNATTWAATD

HATTWAATNWTWAAT
Dap-seq
OMalley et al.(2016)
At1g76110_colamp_a
0.934 0.934
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo6g120140.1 ARID/BRIGHT 78 162
Bo6g120140.1 Sox 293 360

Links

Other ARID/BRIGHT,Sox family TFs
Other Brassica oleracea TFs

31 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
BGHDH14_bgh04116 Blumeria graminis BGHDH14_bgh04116 N 0.000
KLTH0E10978g Kluyveromyces thermotolerans KLTH0E10978g N 0.000
estExt_Genewise1.C_sca_3_chr4_2_00632 Nectria haematococca estExt_Genewise1.C_sca_3_chr4_2_00632 N 0.000
NechaG60026 Fusarium solani NechaG60026 N 0.000
NCAS_0C02550 Naumovozyma castellii NCAS_0C02550 N 0.000
MYCTH_2305929 Myceliophthora thermophila MYCTH_2305929 N 0.000
KLTH0E10978g Lachancea thermotolerans KLTH0E10978g N 0.000
FVEG_04708 Fusarium verticillioides FVEG_04708 N 0.000
FPSE_04226 Fusarium pseudograminearum FPSE_04226 N 0.000
FOXG_07781 Fusarium oxysporum FOXG_07781 N 0.000
FGRRES_06071 Fusarium graminearum FGRRES_06071 N 0.000
FFUJ_13265 Fusarium fujikuroi FFUJ_13265 N 0.000
Cob_01816 Colletotrichum orbiculare Cob_01816 N 0.000
Kwal_11747 Kluyveromyces waltii Kwal_11747 N 0.000