CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Bo8g004290
(
Brassica oleracea
)
ARID/BRIGHT,Sox
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF01388 (ARID)
PF00505 (HMG_box)
IPR001606
IPR000910
Bo8g004290
T017014_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
HMGB15
M06696_2.00
Arabidopsis thaliana
TWTAWWATAWRGTWTW
WAWACYWTATWWTAWA
Dap-seq
OMalley et al.(2016)
AT1G04880_col_a
0.830
0.830
HMGB15
M06697_2.00
Arabidopsis thaliana
TATAWHATATRGTWT
AWACYATATDWTATA
Dap-seq
OMalley et al.(2016)
AT1G04880_colamp_a
0.830
0.830
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Bo8g004290.1
ARID/BRIGHT
36
121
DSKLFMGSLERLHSQLSTKFMVPIIGGKDLDLHKLFIEVTSRGGIIKIIHERRWKEVTSKFDFPATATNASFVMRKYYFSLLNNYE
Bo8g004290.1
Sox
243
310
PKPNRSGYNFFFSDQHARLKPLNPGKDREISRMIGELWNKLNEQERLVYQGKAMEDKERYLIEMEEYR
Links
Other
ARID/BRIGHT,Sox
family TFs
Other
Brassica oleracea
TFs
41 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Bra030594
Brassica rapa
Bra030594
I
0.961
Bo8g115380
Brassica oleracea
Bo8g115380
I
0.889
Bra032491
Brassica rapa
Bra032491
I
0.889
Bra015358
Brassica rapa
Bra015358
I
0.876
Thhalv10007631m.g
Eutrema salsugineum
Thhalv10007631m.g
I
0.856
Bo5g004970
Brassica oleracea
Bo5g004970
I
0.843
Bostr.25219s0485
Boechera stricta
Bostr.25219s0485
I
0.830
HMGB15
Arabidopsis thaliana
AT1G04880
D
0.830
Carubv10010835m.g
Capsella rubella
Carubv10010835m.g
I
0.824
fgenesh2_kg.1__427__AT1G04880.1
Arabidopsis lyrata
fgenesh2_kg.1__427__AT1G04880.1
I
0.824
Cagra.1671s0107
Capsella grandiflora
Cagra.1671s0107
I
0.824
orange1.1g046368m.g
Citrus sinensis
orange1.1g046368m.g
I
0.797
Ciclev10005091m.g
Citrus clementina
Ciclev10005091m.g
I
0.784
PK27727.1
Cannabis sativa
PK27727.1
I
0.771
Cucsa.193910
Cucumis sativus
Cucsa.193910
I
0.771
Eucgr.H00052
Eucalyptus grandis
Eucgr.H00052
I
0.771
evm.TU.supercontig_1068.1
Carica papaya
evm.TU.supercontig_1068.1
I
0.771
TCM_020322
Theobroma cacao
TCM_020322
I
0.771
Gorai.011G157600
Gossypium raimondii
Gorai.011G157600
I
0.765
PRUPE_ppa026976mg
Prunus persica
PRUPE_ppa026976mg
I
0.765
MDP0000307705
Malus domestica
MDP0000307705
I
0.765
Pm009491
Prunus mume
Pm009491
I
0.765
Cla003004
Citrullus lanatus
Cla003004
I
0.763
Gorai.005G130200
Gossypium raimondii
Gorai.005G130200
I
0.763
VIT_05s0029g00130
Vitis vinifera
VIT_05s0029g00130
I
0.758
Ca_21617
Cicer arietinum
Ca_21617
I
0.758
29904.m002943
Ricinus communis
29904.m002943
I
0.752
SapurV1A.1542s0040
Salix purpurea
SapurV1A.1542s0040
I
0.745
cassava14246.m1
Manihot esculenta
cassava14246.m1
I
0.745
cassava27713.m1
Manihot esculenta
cassava27713.m1
I
0.745
POPTR_0001s32240
Populus trichocarpa
POPTR_0001s32240
I
0.745
SapurV1A.5889s0010
Salix purpurea
SapurV1A.5889s0010
I
0.739
SapurV1A.0058s0580
Salix purpurea
SapurV1A.0058s0580
I
0.739
GLYMA10G44041
Glycine max
GLYMA10G44041
I
0.725
Lus10007127.g
Linum usitatissimum
Lus10007127.g
I
0.725
Lus10016671.g
Linum usitatissimum
Lus10016671.g
I
0.725
GLYMA20G38761
Glycine max
GLYMA20G38761
I
0.719
GSMUA_Achr8G28470_001
Musa acuminata
GSMUA_Achr8G28470_001
I
0.719
AMTR_s00089p00097770
Amborella trichopoda
AMTR_s00089p00097770
I
0.713
MTR_7g005970
Medicago truncatula
MTR_7g005970
I
0.712
gene06664-v1.0-hybrid
Fragaria vesca
gene06664-v1.0-hybrid
I
0.706