Bra015787 (Brassica rapa)
ARID/BRIGHT,Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF01388 (ARID)
PF00505 (HMG_box)
IPR001606
IPR000910
Bra015787 T017017_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
HMGB9
M06698_2.00
Arabidopsis thaliana
WWHAWTTAATN

NATTAAWTDWW
Dap-seq
OMalley et al.(2016)
At1g76110_col_a
0.928 0.928
HMGB9
M06699_2.00
Arabidopsis thaliana
ATTWAWNATTWAATD

HATTWAATNWTWAAT
Dap-seq
OMalley et al.(2016)
At1g76110_colamp_a
0.928 0.928
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra015787.1-P ARID/BRIGHT 41 125
Bra015787.1-P Sox 256 323

Links

Other ARID/BRIGHT,Sox family TFs
Other Brassica rapa TFs

32 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ZNF354C Homo sapiens ENSG00000177932 D 0.000
ZNF354C Callithrix jacchus ENSCJAG00000018909 I 0.000
ZNF354C Tursiops truncatus ENSTTRG00000011571 I 0.000
ENSTSYG00000008898 Tarsius syrichta ENSTSYG00000008898 I 0.000
ZNF354C Pan troglodytes ENSPTRG00000017613 I 0.000
ENSPPYG00000016117 Pongo abelii ENSPPYG00000016117 I 0.000
ZNF354C Procavia capensis ENSPCAG00000006966 I 0.000
ENSPANG00000002751 Papio anubis ENSPANG00000002751 I 0.000
ZNF354C Otolemur garnettii ENSOGAG00000011077 I 0.000
ENSNLEG00000001445 Nomascus leucogenys ENSNLEG00000001445 I 0.000
ZNF354C Macaca mulatta ENSMMUG00000002485 I 0.000
ZNF354C Gorilla gorilla ENSGGOG00000014245 I 0.000
ENSCSAG00000008484 Chlorocebus sabaeus ENSCSAG00000008484 I 0.000
ENSOARG00000004045 Ovis aries ENSOARG00000004045 N 0.000
ENSBTAP00000021140-D1 Bos grunniens ENSBTAP00000021140-D1 N 0.000