GSMUA_Achr3G00570_001 (Musa acuminata)
ARID/BRIGHT,Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF01388 (ARID)
PF00505 (HMG_box) 		IPR001606
IPR000910 		GSMUA_Achr3G00570_001 T017034_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HMGB9
M06698_2.00 		Arabidopsis thaliana
WWHAWTTAATN
NATTAAWTDWW		 Dap-seq
OMalley et al.(2016)
At1g76110_col_a 		0.745 0.745
HMGB9
M06699_2.00 		Arabidopsis thaliana
ATTWAWNATTWAATD
HATTWAATNWTWAAT		 Dap-seq
OMalley et al.(2016)
At1g76110_colamp_a 		0.745 0.745
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
GSMUA_Achr3P00570_001 ARID/BRIGHT 28 113
GSMUA_Achr3P00570_001 Sox 253 320

Links

Other ARID/BRIGHT,Sox family TFs
Other Musa acuminata TFs

42 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
GSMUA_Achr8G34160_001 Musa acuminata GSMUA_Achr8G34160_001 I 0.908
GSMUA_Achr1G14960_001 Musa acuminata GSMUA_Achr1G14960_001 I 0.882
Cucsa.271870 Cucumis sativus Cucsa.271870 I 0.795
AMTR_s00001p00177580 Amborella trichopoda AMTR_s00001p00177580 N 0.791
Gorai.009G190400 Gossypium raimondii Gorai.009G190400 I 0.781
TCM_034318 Theobroma cacao TCM_034318 I 0.771
PDK_20s1616391g001 Phoenix dactylifera PDK_20s1616391g001 N 0.771
orange1.1g020305m.g Citrus sinensis orange1.1g020305m.g I 0.771
Ciclev10001816m.g Citrus clementina Ciclev10001816m.g I 0.765
PK27175.1 Cannabis sativa PK27175.1 I 0.762
Pm006137 Prunus mume Pm006137 I 0.759
gene08596-v1.0-hybrid Fragaria vesca gene08596-v1.0-hybrid I 0.758
PDK_20s1314261g001 Phoenix dactylifera PDK_20s1314261g001 N 0.752
OPUNC09G16660 Oryza punctata OPUNC09G16660 N 0.752
Ca_04857 Cicer arietinum Ca_04857 I 0.752
PRUPE_ppa009338mg Prunus persica PRUPE_ppa009338mg I 0.752
GLYMA04G02210 Glycine max GLYMA04G02210 I 0.752
MTR_3g114920 Medicago truncatula MTR_3g114920 I 0.752
Eucgr.F03526 Eucalyptus grandis Eucgr.F03526 I 0.746
fgenesh2_kg.2__1891__AT1G76110.1 Arabidopsis lyrata fgenesh2_kg.2__1891__AT1G76110.1 I 0.745
Bostr.20129s0046 Boechera stricta Bostr.20129s0046 I 0.745
evm.TU.supercontig_26.248 Carica papaya evm.TU.supercontig_26.248 I 0.745
MDP0000204804 Malus domestica MDP0000204804 I 0.745
HMGB9 Arabidopsis thaliana AT1G76110 D 0.745
Thhalv10018826m.g Eutrema salsugineum Thhalv10018826m.g I 0.745
30170.m014303 Ricinus communis 30170.m014303 I 0.743
POPTR_0005s26800 Populus trichocarpa POPTR_0005s26800 I 0.743
SapurV1A.0573s0150 Salix purpurea SapurV1A.0573s0150 I 0.743
BGIOSGA029336 Oryza indica BGIOSGA029336 N 0.739
Cagra.0799s0081 Capsella grandiflora Cagra.0799s0081 I 0.739
ORGLA09G0144900 Oryza glaberrima ORGLA09G0144900 N 0.739
OMERI09G13880 Oryza meridionalis OMERI09G13880 N 0.739
Carubv10020597m.g Capsella rubella Carubv10020597m.g I 0.739
OBART09G18350 Oryza barthii OBART09G18350 N 0.735
ONIVA09G19470 Oryza nivara ONIVA09G19470 N 0.735
cassava21037.m1 Manihot esculenta cassava21037.m1 I 0.732
Bra015787 Brassica rapa Bra015787 I 0.730
Bo6g120140 Brassica oleracea Bo6g120140 I 0.730
ORUFI09G19820 Oryza rufipogon ORUFI09G19820 N 0.728
OGLUM09G18910 Oryza glumaepatula OGLUM09G18910 N 0.728
OB09G24850 Oryza brachyantha OB09G24850 N 0.725
OLONG_021805 Oryza longistaminata OLONG_021805 N 0.710