CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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GSMUA_Achr8G34160_001
(
Musa acuminata
)
ARID/BRIGHT,Sox
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF01388 (ARID)
PF00505 (HMG_box)
IPR001606
IPR000910
GSMUA_Achr8G34160_001
T017037_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
HMGB9
M06698_2.00
Arabidopsis thaliana
WWHAWTTAATN
NATTAAWTDWW
Dap-seq
OMalley et al.(2016)
At1g76110_col_a
0.732
0.732
HMGB9
M06699_2.00
Arabidopsis thaliana
ATTWAWNATTWAATD
HATTWAATNWTWAAT
Dap-seq
OMalley et al.(2016)
At1g76110_colamp_a
0.732
0.732
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
GSMUA_Achr8P34160_001
ARID/BRIGHT
77
162
DKLAFMESLRRFHSSMSTKFMIPVIGGRELDLHLLYVEVTQRGGLAKVIEEKKWREVIAAFKFPPTTTSASFVLRRYYLSLLHHYE
GSMUA_Achr8P34160_001
Sox
298
365
PKPNRSAYNFFFAEKHSKLKALYPHREREFSKMIGESWNKLSLEERTVYQDYGQKDKERYKREMQEYQ
Links
Other
ARID/BRIGHT,Sox
family TFs
Other
Musa acuminata
TFs
41 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
GSMUA_Achr3G00570_001
Musa acuminata
GSMUA_Achr3G00570_001
I
0.908
GSMUA_Achr1G14960_001
Musa acuminata
GSMUA_Achr1G14960_001
I
0.902
AMTR_s00001p00177580
Amborella trichopoda
AMTR_s00001p00177580
N
0.791
PDK_20s1314261g001
Phoenix dactylifera
PDK_20s1314261g001
N
0.765
orange1.1g020305m.g
Citrus sinensis
orange1.1g020305m.g
I
0.756
Cucsa.271870
Cucumis sativus
Cucsa.271870
I
0.748
OPUNC09G16660
Oryza punctata
OPUNC09G16660
N
0.745
Gorai.009G190400
Gossypium raimondii
Gorai.009G190400
I
0.742
PDK_20s1616391g001
Phoenix dactylifera
PDK_20s1616391g001
N
0.739
Cagra.0799s0081
Capsella grandiflora
Cagra.0799s0081
I
0.732
Ciclev10001816m.g
Citrus clementina
Ciclev10001816m.g
I
0.732
Carubv10020597m.g
Capsella rubella
Carubv10020597m.g
I
0.732
OMERI09G13880
Oryza meridionalis
OMERI09G13880
N
0.732
ORGLA09G0144900
Oryza glaberrima
ORGLA09G0144900
N
0.732
BGIOSGA029336
Oryza indica
BGIOSGA029336
N
0.732
HMGB9
Arabidopsis thaliana
AT1G76110
D
0.732
fgenesh2_kg.2__1891__AT1G76110.1
Arabidopsis lyrata
fgenesh2_kg.2__1891__AT1G76110.1
I
0.732
30170.m014303
Ricinus communis
30170.m014303
I
0.730
PK27175.1
Cannabis sativa
PK27175.1
I
0.728
OBART09G18350
Oryza barthii
OBART09G18350
N
0.728
ONIVA09G19470
Oryza nivara
ONIVA09G19470
N
0.728
Bostr.20129s0046
Boechera stricta
Bostr.20129s0046
I
0.725
cassava21037.m1
Manihot esculenta
cassava21037.m1
I
0.725
TCM_034318
Theobroma cacao
TCM_034318
I
0.725
Eucgr.F03526
Eucalyptus grandis
Eucgr.F03526
I
0.724
Pm006137
Prunus mume
Pm006137
I
0.724
OGLUM09G18910
Oryza glumaepatula
OGLUM09G18910
N
0.721
ORUFI09G19820
Oryza rufipogon
ORUFI09G19820
N
0.721
evm.TU.supercontig_26.248
Carica papaya
evm.TU.supercontig_26.248
I
0.719
OB09G24850
Oryza brachyantha
OB09G24850
N
0.719
Thhalv10018826m.g
Eutrema salsugineum
Thhalv10018826m.g
I
0.719
GLYMA04G02210
Glycine max
GLYMA04G02210
I
0.719
gene08596-v1.0-hybrid
Fragaria vesca
gene08596-v1.0-hybrid
I
0.712
MTR_3g114920
Medicago truncatula
MTR_3g114920
I
0.712
Ca_04857
Cicer arietinum
Ca_04857
I
0.712
PRUPE_ppa009338mg
Prunus persica
PRUPE_ppa009338mg
I
0.711
Bra015787
Brassica rapa
Bra015787
I
0.704
SapurV1A.0573s0150
Salix purpurea
SapurV1A.0573s0150
I
0.704
POPTR_0005s26800
Populus trichocarpa
POPTR_0005s26800
I
0.704
Bo6g120140
Brassica oleracea
Bo6g120140
I
0.704
OLONG_021805
Oryza longistaminata
OLONG_021805
N
0.702