CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
OBART02G16380
(
Oryza barthii
)
ARID/BRIGHT,Sox
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF01388 (ARID)
PF00505 (HMG_box)
IPR001606
IPR000910
OBART02G16380
T017049_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
OBART02G16380.1
ARID/BRIGHT
77
162
DAAVFRRALEGLHAQMGTKLKVPIIGGKDLDLHQLFKEVTSRGGIDKVKSDNRWREVTASFIFPATATNASFMLKKYYMSLLYHFE
OBART02G16380.1
Sox
285
352
PKPNRSGYNFFFQDQHRKLKPEYPGQDRLISKMIGERWNNLGPEDKAVYQEKGVEDKARYQRQLALYR
Links
Other
ARID/BRIGHT,Sox
family TFs
Other
Oryza barthii
TFs
19 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
OLONG_013998
Oryza longistaminata
OLONG_013998
N
1.000
OMERI02G15910
Oryza meridionalis
OMERI02G15910
N
1.000
BGIOSGA008185
Oryza indica
BGIOSGA008185
N
1.000
OGLUM02G16420
Oryza glumaepatula
OGLUM02G16420
N
1.000
ORUFI02G16870
Oryza rufipogon
ORUFI02G16870
N
1.000
OS02G0469900
Oryza sativa
OS02G0469900
N
1.000
OPUNC02G14620
Oryza punctata
OPUNC02G14620
N
0.987
OB0121G10030
Oryza brachyantha
OB0121G10030
N
0.949
BRADI3G43310
Brachypodium distachyon
BRADI3G43310
N
0.908
Traes_6AS_A465E600A
Triticum aestivum
Traes_6AS_A465E600A
N
0.908
ONIVA02G17640
Oryza nivara
ONIVA02G17640
N
0.902
MLOC_42821
Hordeum vulgare
MLOC_42821
I
0.902
Pavir.Aa02269
Panicum virgatum
Pavir.Aa02269
N
0.895
Sb04g017850
Sorghum bicolor
Sb04g017850
N
0.895
Pavir.Ab01767
Panicum virgatum
Pavir.Ab01767
N
0.889
GRMZM2G024976
Zea mays
GRMZM2G024976
N
0.882
Si017168m.g
Setaria italica
Si017168m.g
N
0.876
LPERR02G13140
Leersia perrieri
LPERR02G13140
I
0.850
TRIUR3_18598
Triticum urartu
TRIUR3_18598
N
0.752