PGSC0003DMG400029327 (Solanum tuberosum)
ARID/BRIGHT,Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF01388 (ARID)
PF00505 (HMG_box) 		IPR001606
IPR000910 		PGSC0003DMG400029327 T017065_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HMGB9
M06698_2.00 		Arabidopsis thaliana
WWHAWTTAATN
NATTAAWTDWW		 Dap-seq
OMalley et al.(2016)
At1g76110_col_a 		0.752 0.752
HMGB9
M06699_2.00 		Arabidopsis thaliana
ATTWAWNATTWAATD
HATTWAATNWTWAAT		 Dap-seq
OMalley et al.(2016)
At1g76110_colamp_a 		0.752 0.752
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PGSC0003DMT400075402 ARID/BRIGHT 1 65
PGSC0003DMT400075402 Sox 163 230
PGSC0003DMT400075403 ARID/BRIGHT 30 115
PGSC0003DMT400075403 Sox 213 280

Links

Other ARID/BRIGHT,Sox family TFs
Other Solanum tuberosum TFs

24 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Solyc12g094440.1 Solanum lycopersicum Solyc12g094440.1 I 0.942
TCM_034318 Theobroma cacao TCM_034318 I 0.805
Ciclev10001816m.g Citrus clementina Ciclev10001816m.g I 0.797
orange1.1g020305m.g Citrus sinensis orange1.1g020305m.g I 0.797
gene08596-v1.0-hybrid Fragaria vesca gene08596-v1.0-hybrid I 0.767
MDP0000204804 Malus domestica MDP0000204804 I 0.767
Thhalv10018826m.g Eutrema salsugineum Thhalv10018826m.g I 0.759
Eucgr.F03526 Eucalyptus grandis Eucgr.F03526 I 0.754
Carubv10020597m.g Capsella rubella Carubv10020597m.g I 0.752
Cagra.0799s0081 Capsella grandiflora Cagra.0799s0081 I 0.752
Gorai.009G190400 Gossypium raimondii Gorai.009G190400 I 0.748
Cucsa.271870 Cucumis sativus Cucsa.271870 I 0.742
evm.TU.supercontig_26.248 Carica papaya evm.TU.supercontig_26.248 I 0.739
cassava21037.m1 Manihot esculenta cassava21037.m1 I 0.732
30170.m014303 Ricinus communis 30170.m014303 I 0.730
PK27175.1 Cannabis sativa PK27175.1 I 0.722
mgf019342m Mimulus guttatus mgf019342m N 0.722
GLYMA04G02210 Glycine max GLYMA04G02210 I 0.721
Ca_04857 Cicer arietinum Ca_04857 I 0.719
Lus10021228.g Linum usitatissimum Lus10021228.g I 0.719
POPTR_0005s26800 Populus trichocarpa POPTR_0005s26800 I 0.711
Pm006137 Prunus mume Pm006137 I 0.703
MTR_3g114920 Medicago truncatula MTR_3g114920 I 0.701