PGSC0003DMG400029327 (Solanum tuberosum)
ARID/BRIGHT,Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF01388 (ARID)
PF00505 (HMG_box) 		IPR001606
IPR000910 		PGSC0003DMG400029327 T017065_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HMGB9
M06698_2.00 		Arabidopsis thaliana
WWHAWTTAATN
NATTAAWTDWW		 Dap-seq
OMalley et al.(2016)
At1g76110_col_a 		0.752 0.752
HMGB9
M06699_2.00 		Arabidopsis thaliana
ATTWAWNATTWAATD
HATTWAATNWTWAAT		 Dap-seq
OMalley et al.(2016)
At1g76110_colamp_a 		0.752 0.752
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PGSC0003DMT400075402 ARID/BRIGHT 1 65
PGSC0003DMT400075402 Sox 163 230
PGSC0003DMT400075403 ARID/BRIGHT 30 115
PGSC0003DMT400075403 Sox 213 280

Links

Other ARID/BRIGHT,Sox family TFs
Other Solanum tuberosum TFs

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24 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action