CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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PGSC0003DMG400031288
(
Solanum tuberosum
)
ARID/BRIGHT,Sox
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF01388 (ARID)
PF00505 (HMG_box)
IPR001606
IPR000910
PGSC0003DMG400031288
T017066_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
HMGB15
M06696_2.00
Arabidopsis thaliana
TWTAWWATAWRGTWTW
WAWACYWTATWWTAWA
Dap-seq
OMalley et al.(2016)
AT1G04880_col_a
0.712
0.712
HMGB15
M06697_2.00
Arabidopsis thaliana
TATAWHATATRGTWT
AWACYATATDWTATA
Dap-seq
OMalley et al.(2016)
AT1G04880_colamp_a
0.712
0.712
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
PGSC0003DMT400080358
ARID/BRIGHT
36
121
SPQLFMETLQKLHADMRTKFMIPVIGGKALDLHRLFVEVTTRGGLSKVLEEKRWKEVTLVFSFPSSATNASFILRKYYISLLFHYE
PGSC0003DMT400080358
Sox
265
332
PKPNRSGYNFFFAEQHARLKPLYPGKDREISRMIGELWNNLNVPEKMVYQERALQDKERYRMEMQDYR
PGSC0003DMT400080360
ARID/BRIGHT
36
121
SPQLFMETLQKLHADMRTKFMIPVIGGKALDLHRLFVEVTTRGGLSKVLEEKRWKEVTLVFSFPSSATNASFILRKYYISLLFHYE
PGSC0003DMT400080360
Sox
265
332
PKPNRSGYNFFFAEQHARLKPLYPGKDREISRMIGELWNNLNVPEKMVYQERALQDKERYRMEMQDYR
Links
Other
ARID/BRIGHT,Sox
family TFs
Other
Solanum tuberosum
TFs
46 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy